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Hi,
I created a new database using the new Swiss prot data.
makeblastdb -in uniprot.sprot.fasta -dbtype prot -parse_seqids
Since I have the script in the same directory, I created a new folder, swissprot, and moved all the uniprot.sprot.fasta* files there.
I ran the script
#Change directory
cd /data/common/MM/data/LepWed/gff/
#Run genevalidator
/data/common/MM/apps/genevalidator-2.1.12-linux-x86_64/genevalidator \
-d swissprot -n 100 /data/common/MM/data/genomes/ortho-5/erroz/Hydlep.pep
and I got this error:
==> Analysing input arguments
*** No BLAST database found at the provided path.
Please ensure that the provided path is correct and then try again.
Why is it not detecting the database I just created?
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