QuPath-BIOP catalog

Since version 0.6.0, QuPath use catalogs to easily install, manage, and delete QuPath extensions. This repository consists of the catalog containing the QuPath extensions developed by the @BIOP team.

Extensions in this catalog

Note: Only extensions which are compatible with QuPath-0.6.x are present in the catalog.

This catalog includes the following extensions

QuPath Cellpose extension

• First version compatible with QuPath 0.6.x: v0.11.0
• Last version compatible with QuPath 0.6.x: ....
• Repository: https://github.com/BIOP/qupath-extension-cellpose

QuPath Spotiflow extension

• First version compatible with QuPath 0.6.x: v0.2.0
• Last version compatible with QuPath 0.6.x: ....
• Repository: https://github.com/BIOP/qupath-extension-spotiflow

QuPath BIOP extension

• First version compatible with QuPath 0.6.x: v3.3.0
• Last version compatible with QuPath 0.6.x: ....
• Repository: https://github.com/BIOP/qupath-extension-biop

QuPath ABBA extension

• First version compatible with QuPath 0.6.x: v0.4.0
• Last version compatible with QuPath 0.6.x: ....
• Repository: https://github.com/BIOP/qupath-extension-abba

QuPath Warpy extension

• First version compatible with QuPath 0.6.x: v0.4.2
• Last version compatible with QuPath 0.6.x: ....
• Repository: https://github.com/BIOP/qupath-extension-warpy

Installation

This catalog is NOT enabled by default in QuPath. In order to add it to the list of available catalogs:

1. Open QuPath
2. Go to Extensions → Manage extensions
3. Click Manage extension catalogs
4. Enter the catalog URL: https://github.com/BIOP/qupath-biop-catalog
5. Browse and install the extensions you need

Note: full documentation is available in this tutorial