scMaSigPro-Common-Root-Cells

scMaSigPro 0.0.4 (2024-07-30)

• Dependency Changes

  • Removed hard dependency on RColorConesa and ComplexUpset.
  • Removed assertthat, stringr from namespace.
  • Removed maSigPro::position from namespace.

• Plotting Updates

  • Updated plot functions to use a custom palette.
  • Updated plotTrendCluster function for distinct layers.
  • Enhanced plotIntersect() with return capabilities.
  • Enhanced plotTrend with curves, lines, and points.
  • Updated ordering by frequency in UpsetR.

• Function Updates

  • Added clean_string() internal function.
  • Added sc.restruct() function.
  • Exported pb_helpers().

• Documentation Updates

  • General code styling.
  • Updated README with citation information.
  • Single comprehensive data documentation.
  • Added a new vignette.

• Bug Fixes

  • Removed patchwork call.

#39

Bug fixes in generic functions

• Bug fixes

  • eSparse() and eDense() indexes
  • Removed the ComplexUpset error due to ggplot 3.5.0.

• Remove Package Dependence

  • SummarizedExperiment
  • ComplexUpset

• Package Suggestions Added

  • Patchwork
  • ComplexUpset
  • UpSetR

• Updated Test cases

  • Functionality of eSparse() and eDense()
  • Testing sc.squeeze() against manual pseudo-bulking

v0.0.1-beta

Update r.yml