v2.9.1

COBREXA v2.9.1

Diff since v2.9.0

Merged pull requests:

• small fixes in the medium tutorials (#100) (@exaexa)
• add some docs w.r.t. solver settings (#102) (@exaexa)

Closed issues:

• Typo in 'Parsimonious growth medium' tutorial (#99)

v2.9.0

COBREXA v2.9.0

Diff since v2.8.0

Merged pull requests:

• minor wording fixes in ecfba tutorial (#91) (@exaexa)
• add a bit of documentation about missing kcats (#94) (@exaexa)
• fix n_filled and add cost_filled in gap_filling_constraints (#97) (@exaexa)
• medium optimizations (#98) (@exaexa)

Closed issues:

• Feature request: allowing NaN values in kcat entries for enzyme-constrained models (#93)

v2.8.0

COBREXA v2.8.0

Diff since v2.7.0

Merged pull requests:

• steadycom (#89) (@exaexa)
• update citation info (#90) (@exaexa)

v2.7.0

COBREXA v2.7.0

Diff since v2.6.1

Merged pull requests:

• Add sRBA and community ecFBA examples (#84) (@stelmo)

v2.6.1

COBREXA v2.6.1

Diff since v2.6.0

Merged pull requests:

• fix regression with string capacity names (#87) (@exaexa)

v2.6.0

COBREXA v2.6.0

Diff since v2.5.0

Merged pull requests:

• Patch bound constructors (#85) (@stelmo)

v2.5.0

COBREXA v2.5.0

Diff since v2.4.0

Merged pull requests:

• small cleaning (#79) (@exaexa)
• add an explicit warning about what happens if people gapfill pseudoreactions (#80) (@exaexa)
• Generalize enzymes (#82) (@stelmo)

Closed issues:

• Gap filling produces nonempty result when filling a model that is already feasible (#78)

v2.4.0

COBREXA v2.4.0

Diff since v2.3.1

Merged pull requests:

• simplify unsigned constraints a bit (#77) (@exaexa)

v2.3.1

COBREXA v2.3.1

Diff since v2.3.0

Merged pull requests:

• add a few packages to the docker (#75) (@exaexa)
• use a parallel reduction for isozyme_amount_variables (#76) (@exaexa)

v2.3.0

COBREXA v2.3.0

Diff since v2.2.2

Merged pull requests:

• implement gapfilling (#74) (@exaexa)

Closed issues:

• check if docker containers are tagged properly on releases (#46)
• Gap-filling / knock-in support (#73)