Decomp mod unittest

src/CMakeLists.txt

@@ -13,18 +13,20 @@ project(clm_tests Fortran C)
 
 include(CIME_utils)
 
-
 # find needed external packages
 # NetCDF is required -- because PIO and NetCDF are required by the standard default ESMF libraries
 find_package(NetCDF 4.7.4 REQUIRED Fortran)
 
 # The following - for finding ESMF - is copied from the share CMakeLists.txt
-if (DEFINED ENV{ESMF_ROOT})
+if(DEFINED ENV{ESMF_ROOT})
   list(APPEND CMAKE_MODULE_PATH $ENV{ESMF_ROOT}/cmake)
 endif()
+
 find_package(ESMF REQUIRED)
+
 # This adds include directories needed for ESMF
 set(CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${ESMF_F90COMPILEPATHS} ")
+
 # This (which is *not* done in the share CMakeLists.txt) adds all directories and
 # libraries needed when linking ESMF, including any dependencies of ESMF. (But note that
 # this does *not* include the "-lesmf" itself). In particular, note that this includes any
@@ -43,12 +45,12 @@ add_subdirectory(${SRCROOT}/share/src csm_share)
 add_subdirectory(${SRCROOT}/share/unit_test_stubs/util csm_share_stubs)
 
 # Add files needed from CMEPS
-list ( APPEND drv_sources_needed
+list(APPEND drv_sources_needed
   ${SRCROOT}/components/cmeps/cesm/nuopc_cap_share/glc_elevclass_mod.F90
   ${SRCROOT}/components/cmeps/cesm/nuopc_cap_share/shr_dust_emis_mod.F90
   ${SRCROOT}/components/cmeps/cesm/nuopc_cap_share/shr_expr_parser_mod.F90
   ${SRCROOT}/components/cmeps/cesm/nuopc_cap_share/shr_fire_emis_mod.F90
-  )
+)
 
 # Add CLM source directories
 add_subdirectory(${CLM_ROOT}/src/utils clm_utils)
@@ -60,6 +62,14 @@ add_subdirectory(${CLM_ROOT}/src/main clm_main)
 add_subdirectory(${CLM_ROOT}/src/init_interp clm_init_interp)
 add_subdirectory(${CLM_ROOT}/src/self_tests clm_self_tests)
 
+# Add FATES source directories
+add_subdirectory(${CLM_ROOT}/src/fates/main fates_main)
+add_subdirectory(${CLM_ROOT}/src/fates/biogeochem fates_biogeochem)
+add_subdirectory(${CLM_ROOT}/src/fates/biogeophys fates_biogeophys)
+add_subdirectory(${CLM_ROOT}/src/fates/parteh fates_parteh)
+add_subdirectory(${CLM_ROOT}/src/fates/fire fates_fire)
+add_subdirectory(${CLM_ROOT}/src/fates/radiation fates_radiation)
+
 # Add general unit test directories (stubbed out files, etc.)
 add_subdirectory(unit_test_stubs)
 add_subdirectory(unit_test_shr)
@@ -69,10 +79,11 @@ add_subdirectory(unit_test_shr)
 # TODO: this should be moved into a general-purpose function in Sourcelist_utils.
 # Then each removal could be replaced with a single call, like:
 # remove_source_file(${share_sources} "shr_mpi_mod.F90")
-foreach (sourcefile ${share_sources})
+foreach(sourcefile ${share_sources})
   # Remove shr_mpi_mod from share_sources.
   # This is needed because we want to use the mock shr_mpi_mod in place of the real one
   string(REGEX MATCH "shr_mpi_mod.F90" match_found ${sourcefile})
+
   if(match_found)
     list(REMOVE_ITEM share_sources ${sourcefile})
   endif()
@@ -83,6 +94,7 @@ foreach (sourcefile ${share_sources})
   # error message, "Cannot open module file 'pio.mod'") on a Mac without a pre-built PIO
   # (where ESMF was built with its internal PIO).
   string(REGEX MATCH "shr_pio_mod.F90" match_found ${sourcefile})
+
   if(match_found)
     list(REMOVE_ITEM share_sources ${sourcefile})
   endif()
@@ -93,19 +105,20 @@ endforeach()
 add_library(csm_share ${share_sources} ${drv_sources_needed})
 declare_generated_dependencies(csm_share "${share_genf90_sources}")
 add_library(clm ${clm_sources})
+add_library(fates ${fates_sources})
 declare_generated_dependencies(clm "${clm_genf90_sources}")
-add_dependencies(clm csm_share ESMF)
+add_dependencies(clm csm_share ESMF fates)
 
 # We need to look for header files here, in order to pick up shr_assert.h
 include_directories(${SRCROOT}/share/include)
 
 # Tell cmake to look for libraries & mod files here, because this is where we built libraries
 include_directories(${CMAKE_CURRENT_BINARY_DIR})
-include_directories (${NETCDF}/include)
+include_directories(${NETCDF}/include)
 
 # Directories and libraries to include in the link step
 link_directories(${CMAKE_CURRENT_BINARY_DIR})
-link_libraries( netcdf esmf )
+link_libraries(netcdf esmf)
 
 # Add the test directories
 # Note: it's possible that these could be added by each source directory that
@@ -125,4 +138,3 @@ add_subdirectory(${CLM_ROOT}/src/self_tests/test clm_self_tests_test)
 # Add driver unit test directories
 # (these should be moved to the appropriate submodule)
 add_subdirectory(${CLM_ROOT}/src/drv_test drv_test)
-

src/main/test/CMakeLists.txt

@@ -8,4 +8,5 @@ add_subdirectory(filter_test)
 add_subdirectory(initVertical_test)
 add_subdirectory(ncdio_utils_test)
 add_subdirectory(topo_test)
+add_subdirectory(decomp_test)
 add_subdirectory(abortutils_test)

src/main/test/decomp_test/CMakeLists.txt

@@ -0,0 +1,8 @@
+set(pfunit_sources
+  test_decompMod.pf)
+
+add_pfunit_ctest(decomp
+  TEST_SOURCES "${pfunit_sources}"
+  LINK_LIBRARIES clm csm_share esmf
+  EXTRA_FINALIZE unittest_finalize_esmf
+  EXTRA_USE unittestInitializeAndFinalize)

src/main/test/decomp_test/test_decompMod.pf

@@ -0,0 +1,106 @@
+module test_decompMod
+
+  ! Tests of decompMod
+
+  use funit
+  use decompMod
+  use shr_kind_mod , only : r8 => shr_kind_r8
+
+  implicit none
+
+  @TestCase
+  type, extends(TestCase) :: TestDecompMod
+   contains
+     procedure :: setUp
+     procedure :: tearDown
+     procedure :: create_simpleSingleDecomp
+  end type TestDecompMod
+
+  integer, parameter :: ni = 2
+  integer, parameter :: nj = 2
+
+contains
+
+  ! ========================================================================
+  ! Helper routines
+  ! ========================================================================
+
+  subroutine setUp(this)
+    class(TestDecompMod), intent(inout) :: this
+
+    call this%create_simpleSingleDecomp()
+  end subroutine setUp
+
+  subroutine tearDown(this)
+    class(TestDecompMod), intent(inout) :: this
+
+    call decompmod_clean()
+
+  end subroutine tearDown
+
+  subroutine create_simpleSingleDecomp(this)
+    use spmdMod, only : iam
+    class(TestDecompMod), intent(inout) :: this
+
+    integer :: clump_pproc
+    ! TOTO: When decompMod has it's own allocate method that could be used here
+    nclumps = 1
+    clump_pproc = nclumps
+    allocate(procinfo%cid(clump_pproc))
+    allocate(clumps(nclumps))
+    ! Set the procinfo and clumps values
+    ! TOD: Use initialization method when available (currently in decompInitMod)
+    procinfo%cid = 1
+    procinfo%ncells = ni*nj
+    procinfo%begg = 1
+    procinfo%endg = procinfo%ncells
+    procinfo%nclumps = nclumps
+    clumps(:)%owner = iam
+    clumps(:)%begg = 1
+    clumps(:)%endg = procinfo%ncells
+
+  end subroutine create_simpleSingleDecomp
+  ! ========================================================================
+  ! Begin tests
+  ! ========================================================================
+
+  @Test
+  subroutine test_get_clump_bounds(this)
+    class(TestDecompMod), intent(inout) :: this
+
+    type(bounds_type) :: bounds
+    integer :: n
+
+    do n = 1, procinfo%nclumps
+       call get_clump_bounds(n, bounds)
+       @assertEqual(bounds%level, bounds_level_clump)
+       @assertEqual(bounds%clump_index, n)
+    end do
+  end subroutine test_get_clump_bounds
+
+  @Test
+  subroutine test_get_proc_bounds(this)
+    class(TestDecompMod), intent(inout) :: this
+
+    type(bounds_type) :: bounds
+
+    ! Add optional argument, just to test that it can handle it
+    call get_proc_bounds(bounds, allow_call_from_threaded_region=.true.)
+    @assertEqual(bounds%level, bounds_level_proc)
+    @assertEqual(bounds%clump_index, -1)
+  end subroutine test_get_proc_bounds
+
+  @Test
+  subroutine test_proc_clump_bounds_equal(this)
+    class(TestDecompMod), intent(inout) :: this
+
+    type(bounds_type) :: bounds_clump, bounds_proc
+
+    @assertTrue(procinfo%nclumps == 1)
+    call get_clump_bounds(1, bounds_clump)
+    call get_proc_bounds(bounds_proc)
+    @assertEqual(bounds_proc%begg, bounds_clump%begg)
+    @assertEqual(bounds_proc%endg, bounds_clump%endg)
+  end subroutine test_proc_clump_bounds_equal
+
+end module test_decompMod

src/utils/CMakeLists.txt

@@ -22,6 +22,7 @@ list(APPEND clm_sources
   SparseMatrixMultiplyMod.F90
   IssueFixedMetadataHandler.F90
   NumericsMod.F90
+  spmdMod.F90
   )
 
 sourcelist_to_parent(clm_sources)