v1.0.7

Introduce several updates and bugfixes:

• Modification of the submission process to allow for alternative job clustering applications
• Improved versioning. When a check script discovers a new release, it will update the release tag for the corresponding data source. However, this can cause conflict if the downstream scripts were not triggered/failed, leading to a release tag that is not corresponding to the current version of the data. Thus, check scripts will update a tag called NEW-[DATASOURCE] where [DATASOURCE] is the name of the data source. a Prd script will then take that NEW-[DATASOURCE] tag value to update the [DATASOURCE] tag value which will represent the version of the data in the database. If the NEW-[DATASOURCE] and the [DATASOURCE] tag differs, no new update will be triggered until that version of the data is processed.
• Complete removal of rmj_ scripts: This rewriting simplifies the code base, centralize the batch jobs processing and allow for alternative job clustering applications.
• Separate the installation script in two for easier reusability
• Separate protein sequence alignment and protein domain sequence alignment as two distinct processes, allowing more flexibility for users
• Create a prd_chembl
• Correct issue in singularity definition in which the uninstall of a package would trigger a crash
• Add clustalw in the singularity definition
• Drug names with double quotes or anti slash were triggering a failure. Those cases are now handled
• Removed ALFA files that are not provided by NCBI anymore
• Change paths for ALFA scripts to reflect changes in rmj_scripts
• Update path for GTEX as web location changed
• Allow GTEX to be triggered automatically. (was manual before)

What's Changed

• Create SECURITY.md by @jdesaphy in #3
• Patch config 1 by @jdesaphy in #5
• Patch api 1 by @jdesaphy in #7
• Feature reviewer quickstart by @jdesaphy in #9
• Patch biorj variant by @jdesaphy in #11
• Patch omim by @jdesaphy in #13
• Update BioRelsEXT by @jdesaphy in #19
• Bio rels ext by @jdesaphy in #27
• Patch chembl drugbank by @jdesaphy in #29
• Apply the check to all array_combine calls by @jdesaphy in #30
• Patch license docs by @jdesaphy in #31
• Add images by @jdesaphy in #32
• Improve docs and README by @jdesaphy in #34
• Update dockerfile by @jdesaphy in #35
• Ft job status by @jdesaphy in #37
• Ft job submission by @jdesaphy in #38

Full Changelog: v1.0.6...v1.0.7