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The reference name would be like this. >`>ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593.15 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NAE1 description:NEDD8 activating enzyme E1 subunit 1 [Source:HGNC Symbol;Acc:HGNC:621]` The old cold will store the transcript id as `ENST00000290810 cdna chromosome:GRCh38:16:66802878:66830976:-1 gene:ENSG00000159593`, which was not able to use in the converting transcriptome locations to genome locations.
Revert "fixing bug for Ensembl cDNA fasta"
fixing bug for Ensembl cDNA fasta
update version to 2.1.1
yuukiiwa
changed the title
Repackage xpore & add Yuk Kei's CI
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Summary
xPore v2.1 has some minor changes from the previous version, which include the following.
dataprep, which can now handle transcriptome fasta files without transcript versionspyteston testingdiffmodWhat's Changed
pytestintegrated by @yuukiiwa in add ci #204pytesttestingdiffmodby @yuukiiwa in add ci #202readFasta()to handle transcriptome fasta without transcript versions by @loganylchen in fixing bug for Ensembl cDNA fasta #201New Contributors