prepare release v0.5.7

[PaulJonasJost]

• General
  • Require Python >=3.11 (Require Python3.11 #1585)
• Documentation
  • Updated references and citations (Revise citation for pyPESTO in README.md #1601, Update references #1609, Update references #1612)
  • Various minor Documentation and Example fixes
• Optimization
  • update scipy interface (Fix scipy deprecation warning for L-BFGS-B/disp #1588)
• Ensemble
  • accurate cutoff based on chi2 distribution (fix cutoff based on chi2 distribution #1566)
• History
  • Add monotonic_history from mutliple histories (Add monotonic_history #1632)
• Profiling
  • split ProfilerTask into descending and ascending parts (split ProfilerTask into descending and ascending parts #1598)
  • Profiles nested CIs (Profiles nested CIs #1584)
• Visualize
  • Fix IndexError in waterfall for all-non-finite values (Fix IndexError in waterfall for all-non-finite values #1600)
  • prettier intervals for profiles by using capstyle (Prettier CIS markers #1607)
  • Improve waterfall plot efficiency (Change cluster assignment and improve waterfallplot efficiency using scatter. #1608)
  • remove unnecessary title and axes labels (remove unnecessary title and axes labels #1589)
  • Nicer pypesto.visualize.profile_cis interval markers (Nicer pypesto.visualize.profile_cis interval markers, issue 1593 #1626)
  • Allow to define colors more flexibly (Allow to define colors more flexibly #1627)
  • Prevent invisible plot due to large cluster number in waterfall plot (Update balancing alpha #1631)
• Objective
  • Updated roadrunner steady state computation (Roadrunner Steady State #1604)

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 83.71%. Comparing base (ce900e8) to head (ff5ae2a).
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Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1611      +/-   ##
===========================================
+ Coverage    83.70%   83.71%   +0.01%     
===========================================
  Files          163      163              
  Lines        14088    14088              
===========================================
+ Hits         11792    11794       +2     
+ Misses        2296     2294       -2     

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[vwiela]

Not sure, but we could think of making an extra category "Documentation" or "Examples" or similar, such that changes in the examples are more visible. I would consider them more interesting and relevant for users than the other things in the category "General".

[dweindl]

Agreed. "GHA and CI improvements" can be removed in my opinion. I'd list the documentation updates only if they are substantial, and then with a more informative message.