Precompiling script for improving YAXArrays precompilation

[linamaes]

precompilation of the following packages:
YAXArrays.jl
Zarr.jl
Statisitcs.jl
Dates.jl

[meggart]

This would add Zarr and NetCDF as direct dependencies to the package. @felixcremer we should discuss how to deal with this. Maybe we could add them as weakdeps and only do the precompilation if these packages are in the environment?

[github-actions]

Benchmark result

Judge result

Benchmark Report for /home/runner/work/YAXArrays.jl/YAXArrays.jl

Job Properties

• Time of benchmarks:
  • Target: 29 Jun 2023 - 09:12
  • Baseline: 29 Jun 2023 - 09:13
• Package commits:
  • Target: 16bd65
  • Baseline: 1d44e9
• Julia commits:
  • Target: 147bdf
  • Baseline: 147bdf
• Julia command flags:
  • Target: None
  • Baseline: None
• Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID	time ratio	memory ratio
["mapslices", "small"]	0.01 (5%) ✅	0.23 (1%) ✅

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

• ["mapslices"]

Julia versioninfo

Target

Julia Version 1.9.1
Commit 147bdf428cd (2023-06-07 08:27 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1040-azure #47-Ubuntu SMP Thu Jun 1 19:38:24 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1958 s          0 s        288 s       1004 s          0 s
       #2  2294 MHz       1308 s          0 s        275 s       1606 s          0 s
  Memory: 6.7694854736328125 GB (4891.40625 MB free)
  Uptime: 330.86 sec
  Load Avg:  1.52  1.2  0.56
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Baseline

Julia Version 1.9.1
Commit 147bdf428cd (2023-06-07 08:27 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1040-azure #47-Ubuntu SMP Thu Jun 1 19:38:24 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       2065 s          0 s        294 s       1340 s          0 s
       #2  2294 MHz       1645 s          0 s        281 s       1714 s          0 s
  Memory: 6.7694854736328125 GB (5017.90625 MB free)
  Uptime: 376.26 sec
  Load Avg:  1.22  1.17  0.58
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

---

Target result

Benchmark Report for /home/runner/work/YAXArrays.jl/YAXArrays.jl

Job Properties

• Time of benchmark: 29 Jun 2023 - 9:12
• Package commit: 16bd65
• Julia commit: 147bdf
• Julia command flags: None
• Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
["mapslices", "small"]	268.069 ms (5%)	7.866 ms	325.11 MiB (1%)	41608

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

• ["mapslices"]

Julia versioninfo

Julia Version 1.9.1
Commit 147bdf428cd (2023-06-07 08:27 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1040-azure #47-Ubuntu SMP Thu Jun 1 19:38:24 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1958 s          0 s        288 s       1004 s          0 s
       #2  2294 MHz       1308 s          0 s        275 s       1606 s          0 s
  Memory: 6.7694854736328125 GB (4891.40625 MB free)
  Uptime: 330.86 sec
  Load Avg:  1.52  1.2  0.56
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

---

Baseline result

Benchmark Report for /home/runner/work/YAXArrays.jl/YAXArrays.jl

Job Properties

• Time of benchmark: 29 Jun 2023 - 9:13
• Package commit: 1d44e9
• Julia commit: 147bdf
• Julia command flags: None
• Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
["mapslices", "small"]	18.187 s (5%)	586.054 ms	1.37 GiB (1%)	18363258

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

• ["mapslices"]

Julia versioninfo

Julia Version 1.9.1
Commit 147bdf428cd (2023-06-07 08:27 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1040-azure #47-Ubuntu SMP Thu Jun 1 19:38:24 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       2065 s          0 s        294 s       1340 s          0 s
       #2  2294 MHz       1645 s          0 s        281 s       1714 s          0 s
  Memory: 6.7694854736328125 GB (5017.90625 MB free)
  Uptime: 376.26 sec
  Load Avg:  1.22  1.17  0.58
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

---

Runtime information

Runtime Info
BLAS #threads	1
BLAS.vendor()	lbt
Sys.CPU_THREADS	2

lscpu output:

Architecture:                    x86_64
CPU op-mode(s):                  32-bit, 64-bit
Address sizes:                   46 bits physical, 48 bits virtual
Byte Order:                      Little Endian
CPU(s):                          2
On-line CPU(s) list:             0,1
Vendor ID:                       GenuineIntel
Model name:                      Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
CPU family:                      6
Model:                           79
Thread(s) per core:              1
Core(s) per socket:              2
Socket(s):                       1
Stepping:                        1
BogoMIPS:                        4589.37
Flags:                           fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear
Hypervisor vendor:               Microsoft
Virtualization type:             full
L1d cache:                       64 KiB (2 instances)
L1i cache:                       64 KiB (2 instances)
L2 cache:                        512 KiB (2 instances)
L3 cache:                        50 MiB (1 instance)
NUMA node(s):                    1
NUMA node0 CPU(s):               0,1
Vulnerability Itlb multihit:     KVM: Mitigation: VMX unsupported
Vulnerability L1tf:              Mitigation; PTE Inversion
Vulnerability Mds:               Mitigation; Clear CPU buffers; SMT Host state unknown
Vulnerability Meltdown:          Mitigation; PTI
Vulnerability Mmio stale data:   Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown
Vulnerability Retbleed:          Not affected
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1:        Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:        Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds:             Not affected
Vulnerability Tsx async abort:   Mitigation; Clear CPU buffers; SMT Host state unknown

Cpu Property	Value
Brand	Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
Vendor	:Intel
Architecture	:Broadwell
Model	Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00
Cores	2 physical cores, 2 logical cores (on executing CPU)
	No Hyperthreading hardware capability detected
Clock Frequencies	Not supported by CPU
Data Cache	Level 1:3 : (32, 256, 51200) kbytes
	64 byte cache line size
Address Size	48 bits virtual, 46 bits physical
SIMD	256 bit = 32 byte max. SIMD vector size
Time Stamp Counter	TSC is accessible via rdtsc
	TSC increased at every clock cycle (non-invariant TSC)
Perf. Monitoring	Performance Monitoring Counters (PMC) are not supported
Hypervisor	Yes, Microsoft

[codecov]

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.05 🎉

Comparison is base (ee6ba19) 75.21% compared to head (0e6fc9a) 75.26%.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #271      +/-   ##
==========================================
+ Coverage   75.21%   75.26%   +0.05%     
==========================================
  Files          12       13       +1     
  Lines        1840     1868      +28     
==========================================
+ Hits         1384     1406      +22     
- Misses        456      462       +6     

Impacted Files	Coverage Δ
src/YAXArrays.jl	55.55% <ø> (ø)
src/Precompile/precompile.jl	100.00% <100.00%> (ø)

... and 5 files with indirect coverage changes

☔ View full report in Codecov by Sentry.
📢 Do you have feedback about the report comment? Let us know in this issue.

[coveralls]

Pull Request Test Coverage Report for Build 5410458211

• 0 of 0 changed or added relevant lines in 0 files are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage remained the same at 75.307%

---

Totals
Change from base Build 5376433093:	0.0%
Covered Lines:	1348
Relevant Lines:	1790

---

💛 - Coveralls