Develop#57

Merged

acsenrafilho merged 181 commits intomainfrom

Jul 31, 2025

Commits on Jun 17, 2025

ENH: Remove unused kaggle_tools.py file and associated download_brain_atlas function
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ENH: Update MNI2009.json to include dataset URL and detailed labels for brain regions
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ENH: Refactor BrainAtlas class to improve atlas loading and error handling, and add methods for T1-weighted and label data collection
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ENH: Refactor brain normalization function to space normalization, improve template image handling from BrainAtlas, and enhance registration process with console status updates
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ENH: Add comprehensive tests for rigid body registration and head movement correction, including error handling and space normalization validation
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ENH: Add data.brain_atlas reference to documentation and include it in the navigation
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ENH: Add initial test suite for registration module
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ENH: Implement space normalization function and head movement correction, refactor registration methods, and remove obsolete files
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ENH: Refactor registration tests to improve error handling and add comprehensive tests for rigid body and space normalization functions
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ENH: Add tests for head movement correction function, including success and error cases
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ENH: Add tests for error handling in setting atlas and retrieving URL and labels for known atlases
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ENH: Update Python version matrix in CI workflows to include 3.11, 3.12, and 3.13
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ENH: Improve docstring for head movement correction function to clarify parameters, exceptions, and return values
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ENH: Update code formatting check step in CI workflow to use 'lint_check' task
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ENH: Update CI workflow to use 'lint_check' task for code formatting checks and add 'lint_check' command to taskipy
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ENH: Add dataset DOI and citation DOIs to MNI2009 brain atlas JSON
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ENH: Update Python version matrix in CI workflows to include 3.11, 3.12, and 3.13
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ENH: Remove Python 3.13 from version matrix in CI workflows for develop and main branches
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ENH: Add workflow_dispatch trigger to CI for develop branch
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ENH: Add test for ParcellationReport class to validate report generation and saving
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ENH: Implement BasicReport and ParcellationReport classes for report generation
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ENH: Update Python version matrix in CI workflows to only include 3.9 for develop and main branches
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Commits on Jun 18, 2025

Commits on Jun 20, 2025

ENH: Implement progress bar for volume registration in asl_template_registration function
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Commits on Jun 21, 2025

Commits on Jun 25, 2025

Commits on Jun 29, 2025

Merge remote-tracking branch 'origin/main' into issue-26
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Commits on Jul 4, 2025

Commits on Jul 11, 2025

Commits on Jul 28, 2025

Commits on Jul 30, 2025

Commits on Jul 31, 2025