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fix copying dataset.json to output_folder in ensemble_folders function #2857

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fix copying dataset.json to output_folder in ensemble_folders function #2857

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5 changes: 4 additions & 1 deletion nnunetv2/ensembling/ensemble.py
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,8 @@
import shutil
from copy import deepcopy
from typing import List, Union, Tuple
import os
import json

import numpy as np
from batchgenerators.utilities.file_and_folder_operations import load_json, join, subfiles, \
Expand Down Expand Up @@ -93,7 +95,8 @@ def ensemble_folders(list_of_input_folders: List[str],
label_manager = plans_manager.get_label_manager(dataset_json)

maybe_mkdir_p(output_folder)
shutil.copy(join(list_of_input_folders[0], 'dataset.json'), output_folder)
with open(os.path.join(output_folder, 'dataset.json'), 'w') as f:
json.dump(dataset_json, f, indent=4)

with multiprocessing.get_context("spawn").Pool(num_processes) as pool:
num_preds = len(s)
Expand Down