v4.1.1-rc1

What's Changed

• Dataops 1178 update checkqc for projman by @nkongenelly in #134
  • BCLConvert statistics file Demultiplex_Stats.csv is now parsed by illumina parser, making more statistics available for the qc_checkers and any external software using the parser.

Full Changelog: v4.1.0...v4.1.1-rc1

v4.1.0

What's Changed

• Connect QCData to cli and web app by @Aratz in #128
  • This means that preliminary support for BCL Convert has been added. This is an early-stage feature and has not yet been extensively validated on production datasets

Full Changelog: v4.0.7...v4.1.0-rc1

v4.0.7

What's Changed

• Add schema to package_data by @Aratz in #131

WIP - BCLConvert support (not yet connected to the main application)

• Improve Illumina view by @Aratz in #127

Full Changelog: v4.0.6...v4.0.7

v4.0.6

What's Changed

• Add NextSeq 500/550 support by @lbeltrame in #119
• Changed how index reads and non-index reads are identified in error m… by @nkongenelly in #122
• Add config validation (part of #118)

WIP - BCLConvert support (not yet connected to the main application)

• Implement QCData class by @Aratz in #118
• Refactor QCData by @Aratz in #120
• Added percent_q30 using new QCData and QCReport by @nkongenelly in #121
• Implement unidentified index checker by @Aratz in #123
• Implement undetermined percentage checks by @Aratz in #124
• Fix reads per samples by @Aratz in #125

New Contributors

• @lbeltrame made their first contribution in #119

Full Changelog: v4.0.5...v4.0.6-rc1

v4.0.5

What's Changed

• DATAOPS-779: Fix bug in undetermined percentage handler by @matrulda in #117

Full Changelog: v4.0.4...v4.0.5

v4.0.4

What's Changed

• Pin numpy<2 to avoid incompatibility with interop
• Dataops 638 q30 drop per cycle by @monikaBrandt in #115

Full Changelog: v4.0.3...v4.0.4-rc1

v4.0.3

What's Changed

• Fixed issue where incorrect read numbers would be displayed by @nkongenelly in #114

Full Changelog: v4.0.2...v4.0.3

v4.0.2

Patch update:

• The Q30 Handler now checks the index reads as well.

v4.0.1

Patch change:

• Bumped version to be able to make a new PyPI release with the correct tag.

v4.0.0

Major changes

• CheckQC now requires Python v3.10

Minor Changes

• Update Reagent Recognizer to support NovaSeq X Plus Control Software v1.2