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462 refactor sample status filtering 2#468

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aastabk merged 3 commits intosummer25-week-31from
462-refactor-sample-status-filtering-2
Jul 28, 2025
Merged

462 refactor sample status filtering 2#468
aastabk merged 3 commits intosummer25-week-31from
462-refactor-sample-status-filtering-2

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@aastabk aastabk commented Jul 28, 2025

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@aastabk aastabk requested review from mortenlyn and omfj July 28, 2025 08:29
@aastabk aastabk self-assigned this Jul 28, 2025
@aastabk aastabk force-pushed the 462-refactor-sample-status-filtering-2 branch from 49ac0a5 to 9788395 Compare July 28, 2025 09:00
@aastabk aastabk merged commit c09790a into summer25-week-31 Jul 28, 2025
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@aastabk aastabk deleted the 462-refactor-sample-status-filtering-2 branch July 28, 2025 09:01
Comment on lines +269 to +271
("marked", "Marked"),
("plucked", "Plucked"),
("isolated", "Isolated"),
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Føler jeg har sett disse konstantene flere steder. Kan det struktureres og lages én sannhet en plass?

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Litt usikker på hva du mener her. De samme konstantene er brukt i SampleLabView:

class SampleLabView(StaffMixin, SingleTableMixin, SafeRedirectMixin, FilterView):
    MARKED = "marked"
    PLUCKED = "plucked"
    ISOLATED = "isolated"
    VALID_STATUSES = [MARKED, PLUCKED, ISOLATED]

Mener du å lage en egen SampleStatus klasse og definere disse konstantene der, og deretter referere dit?

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Det jeg tenker mest på er at hvis man skriver feil navn et sted så brekker logikken. Eller hvis noen refaktorerer en verdi senere så er det vanskelig å finne alle steder som må oppdateres. Hvis disse faktisk henger sammen bør det være eksponerbare konstanter

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Ja, skjønner! Hva tenker du er beste måten å gjøre det på? Ha en egen constants.py i staff som oppretter disse konstantene?

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En egen fil er kanskje lurt, da slipper man circular imports

github-merge-queue bot pushed a commit that referenced this pull request Jul 30, 2025
* Improve IsolationMethodAdmin. (#404)

* Fix order by sample status (#421)

* Improve dashboard overflow (#429)

* Refactor SafeRedirectMixin to remove repetitive code (#419)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add filtering for sample status (#425)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* 423 remove is seen and is prioritized from table in a order (#432)

* Restrict fields shown in placing an order

* Keep is_urgent as a visible field

* If an order is started (has genlab ids) it cannot be deleted by researchers (#434)

* When all samples are isolated/analysed, the order is set to completed (#439)

* Use tuples. (#418)

* Equipment buttons moved up. Mark as seen button has consistent styling. (#438)

* Equipment buttons moved up. Mark as seen button has consistent styling.

* Mark as seen button follows correct styling

* 406 assign responsible scientist to project (#411)

* Added results contact info for analysis

* Added migrations

* Added migrations

* Safe fields for name and email for analysis results

* Mypy fix

* Safer (?) fix

* Fixed comments

* Removed mark_safe()

* Removed duplicate import

* Changed names of columns (analysis results contact person)

* Make field mandatory

* Fix blank species field (#447)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Minor visual changes for analysis order (#446)

* Minor visual changes for analysis order

* Linter fix

* Linter fix #2

* Linter fix #3

* Processing and complete status are always seen. Added buttons to equipment order. (#459)

* Fix dashboard horizontal scroll (#460)

* Add isolation method to multiple sample types (#427)

* Status logic (#450)

* Order will be set to processing or completed after being a draft if it has already been in those states

* Made the status update to an Order method

* Update SafeRedirectMixin (#440)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Refactor logic to choose when analysis_orders are shown in the CSV and fix N + 1 query. (#430)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Remove status transition buttons for delivered and processing orders (#454)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add FlagField serializer for boolean representation of sample status to keep code DRY (#455)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Changed to "Clear all" as filter text. Samples page also can clear filters. (#467)

* Change name on downloaded csv file (#457)

* Improve IsolationMethodAdmin. (#404)

* Fix order by sample status (#421)

* Improve dashboard overflow (#429)

* Refactor SafeRedirectMixin to remove repetitive code (#419)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add filtering for sample status (#425)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* 423 remove is seen and is prioritized from table in a order (#432)

* Restrict fields shown in placing an order

* Keep is_urgent as a visible field

* If an order is started (has genlab ids) it cannot be deleted by researchers (#434)

* When all samples are isolated/analysed, the order is set to completed (#439)

* Use tuples. (#418)

* Equipment buttons moved up. Mark as seen button has consistent styling. (#438)

* Equipment buttons moved up. Mark as seen button has consistent styling.

* Mark as seen button follows correct styling

* 406 assign responsible scientist to project (#411)

* Added results contact info for analysis

* Added migrations

* Added migrations

* Safe fields for name and email for analysis results

* Mypy fix

* Safer (?) fix

* Fixed comments

* Removed mark_safe()

* Removed duplicate import

* Changed names of columns (analysis results contact person)

* Make field mandatory

* Fix blank species field (#447)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Minor visual changes for analysis order (#446)

* Minor visual changes for analysis order

* Linter fix

* Linter fix #2

* Linter fix #3

* Processing and complete status are always seen. Added buttons to equipment order. (#459)

* Fix dashboard horizontal scroll (#460)

* Add isolation method to multiple sample types (#427)

* Status logic (#450)

* Order will be set to processing or completed after being a draft if it has already been in those states

* Made the status update to an Order method

* Update SafeRedirectMixin (#440)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Refactor logic to choose when analysis_orders are shown in the CSV and fix N + 1 query. (#430)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Remove status transition buttons for delivered and processing orders (#454)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add FlagField serializer for boolean representation of sample status to keep code DRY (#455)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Make specified CSV filenames with order id

---------

Co-authored-by: Emil Telstad <22004178+emilte@users.noreply.github.com>
Co-authored-by: Ole Magnus <me@omfj.no>
Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>
Co-authored-by: Bertine <112892518+aastabk@users.noreply.github.com>

* Add AnalysisMarkerAutocomplete and filter for markers in AnalysisOrders page (#461)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* 462 refactor sample status filtering 2 (#468)

* Filter on marked, plucked and isolated

* Remove prints

* Reuse filter method

* Remove prioritization feature on samples (#471)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add markers to staff samples view (#428)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Update logic for analysisorder (#472)

* Remove custom order on dashboard (#475)

* Fixed error in mark as seen. Adding svg for exclaimation mark. (#481)

* Fixed error in mark as seen. Adding svg for exclaimation mark.

* Cleanup

* Assign staff multiselect (#300)

* Add project filtering and activation features (#480)

- Introduced ProjectFilter for filtering projects by number, name, verified status, and active status.
- Updated ProjectTable to include a toggle for project activation.
- Created templates for project verification and activation buttons.
- Added ProjectArchiveActionView to handle project activation state changes.
- Updated URLs to include the new archive action for projects.

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Style dashboard table (#483)

* Use format_html (#479)

* Add static choices support and hide statuses by default in filters (#486)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Remove genetic from table column name (#487)

* Set order to processing when updating sample status (#485)

* Major visual changes (#488)

* Update column order complete sheet csv for terrestrisk (#490)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Fix N+1 query by prefetching order (#491)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Prefetch isolation method to fix N+1 query (#492)

Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>

* Add progress abr for isolated samples (#510)

---------

Co-authored-by: Emil Telstad <22004178+emilte@users.noreply.github.com>
Co-authored-by: Morten Lyngstad <81157760+mortenlyn@users.noreply.github.com>
Co-authored-by: Morten Madsen Lyngstad <morten.lyngstad@bekk.no>
Co-authored-by: Bertine <112892518+aastabk@users.noreply.github.com>
nicokant pushed a commit that referenced this pull request Jul 30, 2025
* Filter on marked, plucked and isolated

* Remove prints

* Reuse filter method
@omfj omfj mentioned this pull request Jul 30, 2025
nicokant pushed a commit that referenced this pull request Jul 30, 2025
* Filter on marked, plucked and isolated

* Remove prints

* Reuse filter method
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4 participants