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@superninja-app superninja-app bot commented Feb 7, 2026

Fixed MyPy EOF triple-quote error and pytest collection EOL string literal error

root added 5 commits February 7, 2026 00:05
…g in dna_origami_simulator

- Complete broken docstring in get_total_performance() method (line 566)
- Fix incomplete f-string in create_spherical_shell() method (line 469)
- Both files now compile without syntax errors
- Resolves MyPy EOF triple-quote error
- Resolves pytest collection EOL string literal error
- Updated import statement in test_end_to_end.py
- Fixed class name references to match actual class in consciousness_assessment.py
- Resolves ImportError during pytest collection
- Updated MicrotubuleSimulator test to use MicrotubuleConfig
- Updated GravitationalCollapseCalculator test to use PenroseParameters
- Fixed test assertions to match new API
- Resolves TypeError: unexpected keyword arguments
…QuantumOrchOR

- Fixed PenroseParameters to use tubulin_mass instead of mass_kg
- Removed non-existent energy_joules parameter
- Fixed QuantumOrchOR to use num_tubulins and coherence_time
- Updated test assertions to match actual API
- Resolves TypeError: unexpected keyword arguments
- Fixed IonChannel tests to use IonChannelConfig and IonChannelType
- Fixed SynapticPlasticity tests to use config dict and initialize() method
- Updated integration tests to use proper config objects
- Replaced all attribute references (weights -> synaptic_weights)
- Resolves TypeError: unexpected keyword arguments for all test files
@Napiersnotes Napiersnotes merged commit 62c576b into main Feb 7, 2026
1 of 4 checks passed
@Napiersnotes Napiersnotes deleted the fix-syntax-errors branch February 7, 2026 00:55
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