adds specific output of number of adapter dimers observed#644
Merged
sfchen merged 3 commits intoOpenGene:masterfrom Jan 22, 2026
Merged
adds specific output of number of adapter dimers observed#644sfchen merged 3 commits intoOpenGene:masterfrom
sfchen merged 3 commits intoOpenGene:masterfrom
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filter structure, so addAdapterDimer is redundant (and double counted!)
sfchen
approved these changes
Jan 22, 2026
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Motivation for the change:
It's important to distinguish reads that are too short by their cause.
User could optimize loading concentration, optical system, base calling parameters, etc to address the first, but needs to focus on library preparation (adapter concentration, library cleanup ,etc) to address the second category. Conflating these two could lead to people to put effort into the wrong cause.