Skip to content

Calculate basic CBF in whole FOV#600

Open
tsalo wants to merge 7 commits intomainfrom
whole-fov-cbf
Open

Calculate basic CBF in whole FOV#600
tsalo wants to merge 7 commits intomainfrom
whole-fov-cbf

Conversation

@tsalo
Copy link
Member

@tsalo tsalo commented Nov 13, 2025

Related to brain masking issues. Our hope is that this will make ASLPrep derivatives still usable in cases where the brain mask is bad.

Changes proposed in this pull request

  • Extract delta-M and calculate basic CBF on all voxels in the acquisition matrix. SCORE/SCRUB and BASIL still use the ASL brain mask.

@tsalo tsalo added the enhancement New feature or request label Nov 13, 2025
@codecov-commenter
Copy link

codecov-commenter commented Nov 13, 2025

Codecov Report

❌ Patch coverage is 69.23077% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 74.77%. Comparing base (b51c487) to head (a14bfd3).

Files with missing lines Patch % Lines
aslprep/interfaces/cbf.py 69.23% 4 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #600      +/-   ##
==========================================
- Coverage   75.09%   74.77%   -0.33%     
==========================================
  Files          38       38              
  Lines        4578     4570       -8     
==========================================
- Hits         3438     3417      -21     
- Misses       1140     1153      +13     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

enhancement New feature or request

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants