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Biodev server moved to VAT #91

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7814a0b
Move Biodev server to VAT server
charvi-077 Apr 9, 2025
5ba8e48
bisque server : fix pypi default link for building image
charvi-077 Apr 22, 2025
30bff93
Bisque server : fix port changes
charvi-077 Apr 22, 2025
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6 changes: 3 additions & 3 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -131,7 +131,7 @@ RUN locale
WORKDIR /var/opt

# Image Convert
RUN wget https://biodev.ece.ucsb.edu/binaries/depot/imgcnv_ubuntu16_2.4.3.tar.gz
RUN wget https://vat.ece.ucsb.edu/binaries/depot/imgcnv_ubuntu16_2.4.3.tar.gz
RUN tar -xvzf imgcnv_ubuntu16_2.4.3.tar.gz
RUN cp imgcnv_ubuntu16_2.4.3/imgcnv /usr/local/bin/
RUN cp imgcnv_ubuntu16_2.4.3/libimgcnv.so.2.4.3 /usr/local/lib/
Expand Down Expand Up @@ -161,11 +161,11 @@ RUN /builder/virtualenv.sh
# ENV PY_INDEX=https://biodev.ece.ucsb.edu/py/bisque/xenial/+simple

# Set custom Python package index and configure pip
ENV PY_INDEX=https://biodev.ece.ucsb.edu/py/bisque/xenial/+simple
ENV PY_INDEX=https://vat.ece.ucsb.edu/devpi/bisque/xenial/+simple
RUN mkdir -p /root/.pip && echo "\
[global]\n\
index-url = $PY_INDEX\n\
trusted-host = biodev.ece.ucsb.edu\n" > /root/.pip/pip.conf
trusted-host = vat.ece.ucsb.edu\n" > /root/.pip/pip.conf

# # Install certifi for updated CA certificates
# RUN pip install certif
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6 changes: 3 additions & 3 deletions builder/20-build-bisque.sh
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@@ -1,10 +1,10 @@
#!/bin/bash
set -x
# INDEX="https://biodev.ece.ucsb.edu/py/bisque/d8/+simple"
PIP_INDEX_URL= pip install -U pip
PIP_INDEX_URL= pip install -U setuptools==34.4.1
PIP_INDEX_URL=https://pypi.org/simple pip install -U pip
PIP_INDEX_URL=https://pypi.org/simple pip install -U setuptools==34.4.1

pip install --extra-index-url https://pypi.org/simple -r requirements.txt
pip install --extra-index-url https://pypi.org/simple -r requirements.txt

#export PIP_INDEX_URL=$INDEX

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2 changes: 1 addition & 1 deletion source/bqcore/bq/commands/templates/core_service/setup.cfg_tmpl
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@@ -1,6 +1,6 @@
[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/

[nosetests]
with-pylons=test.ini
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2 changes: 1 addition & 1 deletion source/bqcore/bq/commands/templates/service/setup.cfg_tmpl
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@@ -1,6 +1,6 @@
[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/

[nosetests]
with-pylons=test.ini
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2 changes: 1 addition & 1 deletion source/bqcore/bq/setup/bisque_setup.py
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Expand Up @@ -184,7 +184,7 @@ class InstallError(Exception):


PYTHON=sys.executable
EXT_SERVER = "http://biodev.ece.ucsb.edu/binaries/depot/" # EXTERNAL host server DIRS['depot']
EXT_SERVER = "https://vat.ece.ucsb.edu/binaries/depot/" # EXTERNAL host server DIRS['depot']


#HOSTNAME = socket.getfqdn()
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2 changes: 1 addition & 1 deletion source/bqcore/setup.cfg
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Expand Up @@ -30,6 +30,6 @@ previous = true

[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/


2 changes: 1 addition & 1 deletion source/bqengine/setup.cfg
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Expand Up @@ -31,4 +31,4 @@ previous = true

[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/
2 changes: 1 addition & 1 deletion source/bqfeature/setup.cfg
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@@ -1,6 +1,6 @@
[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/

[nosetests]
with-pylons=test.ini
Expand Down
2 changes: 1 addition & 1 deletion source/bqserver/setup.cfg
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Expand Up @@ -4,4 +4,4 @@

[easy_install]
find_links = http://www.turbogears.org/2.1/downloads/current/index
http://biodev.ece.ucsb.edu/binaries/depot/
https://vat.ece.ucsb.edu/binaries/depot/