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Refactor code for improved readability and consistency in option hand… Build and Deploy Documentation #35: Commit 397be2c pushed by allyssonallan
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Refactor README and CLI documentation for clarity and conciseness Build and Deploy Documentation #34: Commit 24ef9af pushed by allyssonallan
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Refactor SangerPipeline to enhance configuration handling and metadat… Build and Deploy Documentation #33: Commit e69c7ae pushed by allyssonallan
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Merge branch 'main' of https://github.com/allyssonallan/sanger_adna_d… Build and Deploy Documentation #32: Commit fcd12e5 pushed by allyssonallan
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Merge pull request #1 from allyssonallan:copilot/simplify-readme-and-… Build and Deploy Documentation #31: Commit 6f25b1a pushed by allyssonallan
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Apply black formatting and run flake8 linting Build and Deploy Documentation #29: Commit 4d0adc3 pushed by allyssonallan
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Fix dashboard/report generation and update pipeline execution guide Build and Deploy Documentation #28: Commit 113dab3 pushed by allyssonallan
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feat: Add browser-based Sanger aDNA pipeline with multiple file loadi… Build and Deploy Documentation #27: Commit 7a1ba2a pushed by allyssonallan
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Fix Python 3.8 compatibility: Add future annotations imports Build and Deploy Documentation #26: Commit 2234464 pushed by allyssonallan
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Lower coverage threshold from 25% to 10% Build and Deploy Documentation #25: Commit e7b5c55 pushed by allyssonallan
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Fix CI test failures by separating coverage from main tests Build and Deploy Documentation #24: Commit 103bb72 pushed by allyssonallan
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Add comprehensive project badges and fix coverage thresholds Build and Deploy Documentation #23: Commit 5bc13d9 pushed by allyssonallan
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Add CI improvements documentation Build and Deploy Documentation #22: Commit 5769853 pushed by allyssonallan
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Fix GitHub Actions workflow issues Build and Deploy Documentation #21: Commit 35df715 pushed by allyssonallan
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Fix dependency and CI configuration issues Build and Deploy Documentation #20: Commit 111a5c7 pushed by allyssonallan
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Fix smoke tests: disable coverage requirements Build and Deploy Documentation #19: Commit 52e5e03 pushed by allyssonallan
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Fix CI smoke tests - add pytest fallback and install test dependencies Build and Deploy Documentation #18: Commit b4ca685 pushed by allyssonallan
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Implement comprehensive testing best practices and development workflow Build and Deploy Documentation #17: Commit fb18728 pushed by allyssonallan
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fix: Add mermaid extension to documentation dependencies Build and Deploy Documentation #16: Commit 14c2cd5 pushed by allyssonallan
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feat: Add comprehensive pipeline documentation with mermaid diagrams Build and Deploy Documentation #15: Commit df23cec pushed by allyssonallan
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refactor: Major modular architecture overhaul and test suite fixes Build and Deploy Documentation #14: Commit 77095c4 pushed by allyssonallan
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Update documentation for first analysis tutorial Build and Deploy Documentation #13: Commit 8c9fd8d pushed by allyssonallan
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Add institutional logos with clickable links to report header Build and Deploy Documentation #12: Commit 4b06ea2 pushed by allyssonallan
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Implement comprehensive damage visualization and fix dashboard functi… Build and Deploy Documentation #11: Commit 00bcf91 pushed by allyssonallan
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Repository cleanup and modernization Build and Deploy Documentation #10: Commit a9d299c pushed by allyssonallan
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