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8 changes: 4 additions & 4 deletions openfold/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -108,13 +108,13 @@ def model_config(
# AF2 Suppl. Table 5, Model 1.1.1
c.data.train.max_extra_msa = 5120
c.data.predict.max_extra_msa = 5120
c.data.common.reduce_max_clusters_by_max_templates = True
c.data.common.reduce_msa_clusters_by_max_templates = True
c.data.common.use_templates = True
c.data.common.use_template_torsion_angles = True
c.model.template.enabled = True
elif name == "model_2":
# AF2 Suppl. Table 5, Model 1.1.2
c.data.common.reduce_max_clusters_by_max_templates = True
c.data.common.reduce_msa_clusters_by_max_templates = True
c.data.common.use_templates = True
c.data.common.use_template_torsion_angles = True
c.model.template.enabled = True
Expand All @@ -134,14 +134,14 @@ def model_config(
elif name == "model_1_ptm":
c.data.train.max_extra_msa = 5120
c.data.predict.max_extra_msa = 5120
c.data.common.reduce_max_clusters_by_max_templates = True
c.data.common.reduce_msa_clusters_by_max_templates = True
c.data.common.use_templates = True
c.data.common.use_template_torsion_angles = True
c.model.template.enabled = True
c.model.heads.tm.enabled = True
c.loss.tm.weight = 0.1
elif name == "model_2_ptm":
c.data.common.reduce_max_clusters_by_max_templates = True
c.data.common.reduce_msa_clusters_by_max_templates = True
c.data.common.use_templates = True
c.data.common.use_template_torsion_angles = True
c.model.template.enabled = True
Expand Down