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Pull requests: bgruening/galaxytools

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Pull requests list

New tool addition: search_proteins tool
#1766 opened Feb 3, 2026 by SaimMomin12 Loading…
11
Updating tools/wordcloud from version 1.9.4 to 1.9.6
#1762 opened Jan 26, 2026 by gxydevbot Loading…
openbabel: added pulsar files and fixed linting
#1761 opened Jan 23, 2026 by hechth Loading…
5
Improved DM
#1751 opened Jan 13, 2026 by paulzierep Loading…
Handle RateLimitError in LLM Hub tool
#1743 opened Jan 7, 2026 by arash77 Loading…
1
Add Cleaverna tool
#1739 opened Dec 26, 2025 by reyhaneh-tavakoli • Draft
22
Updating tools/rna_tools/sortmerna from version 4.3.6 to 4.3.7
#1737 opened Dec 22, 2025 by gxydevbot Loading…
Updating tools/flexynesis from version 1.1.3 to 1.1.7
#1724 opened Dec 1, 2025 by gxydevbot Loading…
1
Add BioStudies upload tool
#1716 opened Nov 6, 2025 by davelopez Loading…
Feat: Add two additional cellprofiler modules
#1714 opened Nov 5, 2025 by rmassei Loading…
2
Exploring the addition of groups and their purpose in YOLO configuration
#1687 opened Oct 14, 2025 by TuturBaba • Draft
1
Updating tools/image_processing/imagemagick from version 7.1.2-2 to 7.1.0.43
#1677 opened Sep 8, 2025 by gxydevbot Loading…
7
Updating tools/llm_hub from version 1.101.0 to 2.17.0
#1676 opened Sep 1, 2025 by gxydevbot Loading…
30
update rbpbench
#1658 opened Jul 17, 2025 by PlushZ Loading…
2
Updating tools/hictk from version 2.0.2 to 2.2.0
#1606 opened Apr 14, 2025 by gxydevbot Loading…
8
Fixed Tiara tool error in certain cases
#1595 opened Mar 18, 2025 by daduijker Loading…
10
lint fixes for flux and salmon
#1594 opened Mar 15, 2025 by bgruening • Draft
fix lint
#1590 opened Mar 8, 2025 by bgruening Loading…
Updating tools/bioimaging from version 2.4.1 to 2.6.0
#1578 opened Feb 17, 2025 by gxydevbot Loading…
1
tranfer group_humann2 tool
#1568 opened Jan 17, 2025 by bernt-matthias Loading…
5
Updating tools/chipseeker from version 1.32.0 to 1.42.0
#1564 opened Jan 6, 2025 by gxydevbot Loading…
Updating tools/canu from version 2.2 to 2.3
#1562 opened Dec 30, 2024 by gxydevbot Loading…
Add linter exceptions
#1561 opened Dec 14, 2024 by bernt-matthias Loading…
Add --local option to Bismark Bowtie2 Wrapper (continuation from PR #1537, part 2)
#1545 opened Nov 15, 2024 by jonasbucherETH Loading…
1
Updating tools/rna_tools/rbpbench from version 0.8.1 to 1.1.0
#1531 opened Oct 21, 2024 by gxydevbot Loading…
6
ProTip! What’s not been updated in a month: updated:<2026-01-12.