pedrel

• add new pedrel command to report kinship value for samples from a pedigree file

Installation

grab the static binary , or use docker via brentp/somalier:v0.3.1

sites files

a T2T sites by @kpalin
sites.chm13v2.T2T.vcf.gz
)

These sites files are build-specific, but as of this release, once the sites are extracted, the resulting somalier files can be used to compare samples even across genome builds.

sites.hg19.vcf.gz
sites.hg38.nochr.vcf.gz
sites.GRCh37.vcf.gz
sites.hg38.vcf.gz

Different coordinates from above files: sites.hg38.rna.vcf.gz only includes sites likely to be expressed in GTeX