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…t has no attribute isdigit'. Changed the file saving line to include the compression in the to_csv arguments. This avoids error about something needs to be bytes like and not string...
tpoterba
requested changes
Nov 21, 2019
| if args.annot_file.endswith('.gz'): | ||
| with gzip.open(args.annot_file, 'wb') as f: | ||
| df_annot.to_csv(f, sep = "\t", index = False) | ||
| df_annot.to_csv(args.annot_file, sep = "\t", index = False, compression='\gzip') |
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Can we get rid of the backslash on \gzip?
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also, pandas 0.24 can infer compression based on extension, but not in 0.20 which we're pinned to (bummer)
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Specifying int type for x2 in iter_bim fixes error 'numpy.int64 object has no attribute isdigit'. Changed the file saving line to include the compression in the to_csv arguments. This avoids error about something needs to be bytes like and not string...