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Error in pathway_heatmap(): unused arguments (show_rownames = TRUE, show_colnames = TRUE) and missing "group" argument

questionFurther information is requestedFurther information is requested

Status: Open.

#195 In cafferychen777/ggpicrust2;

· ShahariarArif opened on Jan 10, 2026

[QUESTION] Access PCA/heatmap outputs from ggpicrust2() workflow function

questionFurther information is requestedFurther information is requested

Status: Open.

#192 In cafferychen777/ggpicrust2;

· irc47 opened on Dec 19, 2025

✨ Set up Copilot instructions

Status: Open.

#176 In cafferychen777/ggpicrust2;

· cafferychen777 opened on Aug 20, 2025

ggpicrust2 fails with PICRUSt 2.6.2 output but works with 2.5.2

bugSomething isn't workingSomething isn't working

Status: Open.

#174 In cafferychen777/ggpicrust2;

· saassli21 opened on Aug 19, 2025

[FEATURE] modify pathway_class and pathway_map text size in errobar plot

enhancementNew feature or requestNew feature or request

Status: Open.

#173 In cafferychen777/ggpicrust2;

· Haper699 opened on Aug 11, 2025

Error Reference data file not found: MetaCyc_reference.RData when using pathway_annotation() in ggpicrust2 v2.1.2

bugSomething isn't workingSomething isn't working

Status: Open.

#162 In cafferychen777/ggpicrust2;

· santi-zaragoza opened on Jul 8, 2025

Error in pathway_errorbar with metacyc abundance

Status: Open.

#161 In cafferychen777/ggpicrust2;

· royparamita opened on Jul 8, 2025

Error in pathway_errorbar() ( Some features have less than 3 nonzero values! )

Status: Open.

#159 In cafferychen777/ggpicrust2;

· Valentin-Bio opened on Jun 18, 2025

Bad Request (HTTP 400)

Status: Open.

#156 In cafferychen777/ggpicrust2;

· irvinng98 opened on Jun 11, 2025

Installation not working

Status: Open.

#155 In cafferychen777/ggpicrust2;

· ahiro26 opened on Jun 6, 2025

Error in if (!paste0(".", ext) %in% valid_extensions) { : the condition has length > 1

Status: Open.

#153 In cafferychen777/ggpicrust2;

· ecouradeau opened on May 15, 2025

Problem with pathway errorbar for metacyc pathway

Status: Open.

#152 In cafferychen777/ggpicrust2;

· sarthorn opened on May 12, 2025