Skip to content
@clinicalml

Sontag Lab

Machine learning algorithms and applications to health care.

Pinned Loading

  1. structuredinference structuredinference Public

    Structured Inference Networks for Nonlinear State Space Models

    Jupyter Notebook 276 65

  2. embeddings embeddings Public

    Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"

    Python 250 80

  3. cfrnet cfrnet Public

    Counterfactual Regression

    Python 319 84

  4. HealthKnowledgeGraph HealthKnowledgeGraph Public

    Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data

    104 31

  5. omop-learn omop-learn Public

    Python package for machine learning for healthcare using a OMOP common data model

    Python 111 27

  6. prancer prancer Public

    Platform enabling Rapid Annotation for Clinical Entity Recognition

    JavaScript 49 13

Repositories

Showing 10 of 65 repositories
  • clinicalml/collaborative-effort-scaling’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Nov 4, 2025
  • scset Public
    clinicalml/scset’s past year of commit activity
    Jupyter Notebook 5 BSD-2-Clause 0 0 0 Updated May 16, 2025
  • clinicalml/uti-causal-inference’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 2, 2025
  • realhumaneval Public
    clinicalml/realhumaneval’s past year of commit activity
    Jupyter Notebook 22 CC0-1.0 4 0 0 Updated Nov 5, 2024
  • t2dm_provider_variation_analysis Public

    Code for Variation in First-line Type 2 Diabetes Treatment due to eGFR and Provider Preferences: A Novel Statistical Analysis. Christina X Ji, Saul Blecker, Michael Oberst, Ming-Chieh Shih, Leora I Horwitz, and David Sontag.

    clinicalml/t2dm_provider_variation_analysis’s past year of commit activity
    Python 0 0 0 0 Updated Sep 14, 2024
  • sc-foundation-eval Public

    Code for evaluating single cell foundation models scBERT and scGPT

    clinicalml/sc-foundation-eval’s past year of commit activity
    Jupyter Notebook 46 BSD-3-Clause 5 2 0 Updated Aug 25, 2024
  • large-scale-temporal-shift-study Public

    Code for Large-Scale Study of Temporal Shift in Health Insurance Claims. Christina X Ji, Ahmed M Alaa, David Sontag. CHIL, 2023. https://arxiv.org/abs/2305.05087

    clinicalml/large-scale-temporal-shift-study’s past year of commit activity
    Python 5 0 6 0 Updated Aug 14, 2024
  • seq_to_final_benchmark Public

    Code for Seq-to-Final: A Benchmark for Tuning from Sequential Distributions to a Final Time Point. Christina X Ji, Ahmed M Alaa, David Sontag. https://arxiv.org/abs/2407.09642

    clinicalml/seq_to_final_benchmark’s past year of commit activity
    Python 0 0 0 0 Updated Jul 9, 2024
  • finding-decision-heterogeneity-regions Public

    Code for "Finding Regions of Heterogeneity in Decision-Making via Expected Conditional Covariance" at NeurIPS 2021 https://arxiv.org/abs/2110.14508

    clinicalml/finding-decision-heterogeneity-regions’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jun 18, 2024
  • clinicalml-scBERT-NMI Public

    analysis code to reproduce results in NMI submission

    clinicalml/clinicalml-scBERT-NMI’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Jun 1, 2024

Most used topics

Loading…