Bump toil[cwl] from 9.1.2 to 9.2.0

[dependabot]

Bumps toil[cwl] from 9.1.2 to 9.2.0.

Release notes

Sourced from toil[cwl]'s releases.

9.2.0

Highlighted Features Added

• Toil now supports Python 3.14 (#5412)

Breaking Changes

• Toil no longer works on Python 3.9 (#5412)

CWL

• Bump cwltool from 3.1.20250925164626 to 3.1.20251031082601 (#5407)
• CWL file import now handles file:/path/to/file URIs, and other cases where the input filename is not the same as the normalized candidate URI, when doing import on workers. (#5392)
• CWL file import on workers will no longer symlink tool-associated files. (#5410)

WDL

• Toil now runs (some of) the WDL 1.2 spec tests (#5379, #5375)
• WDL import on workers now works (again?) (#5410)

Dependencies

• Bump github/codeql-action from 2 to 4 (#5399)
• Update pytest-subtests requirement from <0.15,>=0.14.2 to >=0.14.2,<0.16 (#5404)
• Update astroid requirement from <4,>=3 to >=3,<5 (#5424)
• Update gunicorn requirement from <24,>=23.0.0 to >=23.0.0,<26 (#5443)

Misc

• Fixed some typos found while updating the Debian package for Toil (#5403)
• Toil no longer crashes trying to search AWS when the Flatcar release feed is unavailable (#5411)
• Quay.io login now has automatically-generated exponential backoff code (#5440)
• Toil Slurm cluster Docker tests are now using Python 3.12 and a new Slurm container image (#5440)
• Toil Cactus integration test now uses a newer version of Cactus that can shepherd sonLib through the wheel build process (#5440)
• Update AWS inventories for Toil release (#5444)
• Use subtests from pytest 9.x (#5430)
• Randomized deadlock detection tests replaced with static example cases that should definitively pass or fail. (#5354)

Thank you to our contributors: @​mr-c, Alexandre Detiste, and @​adamnovak

Commits

• 03ecbc5 Bump version for release
• 3604f62 Add mostly-synthetic static deadlock detection tests and set random test to j...
• dbbe2ec Update gunicorn requirement from <24,>=23.0.0 to >=23.0.0,<26 (#5443)
• 7507d10 Update astroid requirement from <4,>=3 to >=3,<5 (#5424)
• c040b96 use subtests from pytest 9.x (#5430)
• 06564c8 Update AWS inventories (#5444)
• 62bbc9a Fix failures of scheduled CI tasks (#5441)
• 9684645 Bump cwltool from 3.1.20251031082601 to 3.1.20260108082145 (#5431)
• 24b5ed1 Update ruamel-yaml requirement from <=0.19,>=0.15 to >=0.15,<=0.19.1 (#5426)
• d4b5f10 Update flake8-bugbear requirement from <25,>=20.11.1 to >=20.11.1,<26 (#5423)
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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 71.68%. Comparing base (156c9e5) to head (3a64f5a).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #162   +/-   ##
=======================================
  Coverage   71.68%   71.68%           
=======================================
  Files           4        4           
  Lines         392      392           
=======================================
  Hits          281      281           
  Misses        111      111           

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