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Merged
maphih merged 7 commits into from
Nov 25, 2025
Merged

Protege 5.6.4 #45

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7c61055
compile evee for Protege 5.6.1 using JDK 11; also requires updates to…
stefborg Apr 21, 2023
0413caa
Merge branch 'development' into protege-5.6.1
stefborg Oct 2, 2024
5063cd8
progress towards 5.6.4
stefborg Nov 5, 2024
756f0d7
more updated dependencies
stefborg Feb 25, 2025
ee8c8df
Merge branch 'development' into protege-5.6.1
maphih Nov 20, 2025
a72de04
merge development
maphih Nov 20, 2025
f353c65
fix pom files
maphih Nov 25, 2025
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4 changes: 2 additions & 2 deletions evee-data/evee-data-owlapi4/pom.xml
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Expand Up @@ -39,13 +39,13 @@
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.9.8</version>
<version>2.16.1</version>
</dependency>

<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.9.8</version>
<version>2.16.1</version>
</dependency>


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4 changes: 2 additions & 2 deletions evee-elk-proof-extractor/evee-elk-proof-extractor-owlapi4/pom.xml
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Expand Up @@ -13,8 +13,8 @@
<artifactId>evee-elk-proof-extractor-owlapi4</artifactId>

<properties>
<maven.compiler.source>17</maven.compiler.source>
<maven.compiler.target>17</maven.compiler.target>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
</properties>

<dependencies>
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4 changes: 2 additions & 2 deletions evee-elk-proof-extractor/evee-elk-proof-extractor-owlapi5/pom.xml
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Expand Up @@ -13,8 +13,8 @@
<artifactId>evee-elk-proof-extractor-owlapi5</artifactId>

<properties>
<maven.compiler.source>17</maven.compiler.source>
<maven.compiler.target>17</maven.compiler.target>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
<skipCompilation>false</skipCompilation>
</properties>

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4 changes: 2 additions & 2 deletions evee-elk-proof-extractor/pom.xml
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Expand Up @@ -35,8 +35,8 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
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2 changes: 1 addition & 1 deletion evee-lethe-proof-extractor/evee-lethe-proof-extractor-owlapi4/pom.xml
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Expand Up @@ -22,7 +22,7 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<version>4.5.29</version>
</dependency>
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
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15 changes: 10 additions & 5 deletions evee-protege/evee-protege-abduction-capi/pom.xml
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Expand Up @@ -30,12 +30,17 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<version>4.5.29</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-owl</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<!-- evee-related -->
<dependency>
Expand Down Expand Up @@ -64,14 +69,14 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
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26 changes: 18 additions & 8 deletions evee-protege/evee-protege-abduction-lethe/pom.xml
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Expand Up @@ -22,12 +22,17 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<version>4.5.29</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-owl</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<!-- logging related-->
<dependency>
Expand Down Expand Up @@ -65,24 +70,27 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
<Bundle-SymbolicName>${bundleName};singleton:=true</Bundle-SymbolicName>
<Import-Package>
org.protege.editor.owl.*;version="4.3",
org.protege.editor.core.*;version="4.3",
org.protege.editor.owl.*;version="5.0",
org.protege.editor.core.*;version="5.0",
de.tu_dresden.inf.lat.evee.protege.tools.ui.*,
scala.swing.*;resolution:=optional,
de.tu_dresden.inf.lat.evee.protege.nonEntailment.core.service.*,
scala.swing.*;resolution:=optional,
com.google.appengine.api.*;resolution:=optional,
com.google.apphosting.api.*;resolution:=optional,
com.google.thirdparty.publicsuffix.*;resolution:=optional,
*
</Import-Package>
<Private-Package>
Expand All @@ -97,6 +105,8 @@
junit.framework.*,
junit.runner.*,
org.hamcrest.*,
com.google.common.*,
com.google.common.base.*
</Private-Package>
</instructions>
</configuration>
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44 changes: 27 additions & 17 deletions evee-protege/evee-protege-core/pom.xml
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Expand Up @@ -20,28 +20,34 @@
<!-- owlapi and protege bascis-->
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<artifactId>owlapi-osgidistribution</artifactId>
<version>4.5.29</version>
<exclusions>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-common</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-core</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-owl</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>org.liveontologies</groupId>
<artifactId>protege-proof-explanation</artifactId>
<version>0.1.0</version>
<version>0.2.0-SNAPSHOT</version>
</dependency>
<!-- de.tu-dresden.inf.lat-->
<!-- <dependency>-->
Expand Down Expand Up @@ -72,11 +78,11 @@
<!-- todo: try version 1.8.0-beta1-SNAPSHOT to remove warning during compilation?-->
<version>1.7.30</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>com.google.guava</groupId>-->
<!-- <artifactId>guava</artifactId>-->
<!-- <version>31.1-jre</version>-->
<!-- </dependency>-->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
Expand Down Expand Up @@ -145,16 +151,16 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<version>3.13.0</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
Expand All @@ -168,7 +174,7 @@
*
</Import-Package>
<Export-Package>
com.fasterxml.jackson.*,
com.fasterxml.jackson.*;-split-package:=merge-last,
com.fasterxml.jackson.dataformat.xml,
com.fasterxml.jackson.dataformat.xml.annotation,
com.fasterxml.jackson.dataformat.xml.util,
Expand All @@ -184,6 +190,11 @@
com.typesafe.scalalogging.*,
scala.*,
com.google.errorprone.annotations.*,
<!-- com.google.common.*,
com.google.appengine.api,
com.google.appengine.api.utils,
com.google.apphosting.api,
com.google.thirdparty.publicsuffix, -->
</Export-Package>
<Private-Package>
org.yaml.snakeyaml.*,
Expand All @@ -192,7 +203,6 @@
junit.framework.*,
junit.runner.*,
org.hamcrest.*,

org.graphstream.*,
javax.xml.stream.*,
org.miv.*
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10 changes: 5 additions & 5 deletions evee-protege/evee-protege-counterexample-EL/pom.xml
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Expand Up @@ -22,12 +22,12 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<version>4.5.29</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-owl</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<!-- logging related-->
<dependency>
Expand Down Expand Up @@ -61,14 +61,14 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
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34 changes: 29 additions & 5 deletions evee-protege/evee-protege-counterexample-ELKRelevant/pom.xml
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Expand Up @@ -22,12 +22,32 @@
<dependency>
<groupId>net.sourceforge.owlapi</groupId>
<artifactId>owlapi-distribution</artifactId>
<version>4.5.20</version>
<version>4.5.29</version>
</dependency>
<dependency>
<groupId>edu.stanford.protege</groupId>
<artifactId>protege-editor-owl</artifactId>
<version>5.5.0</version>
<version>5.6.4</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.13.3</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.13.3</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.13.3</version>
</dependency>
<!-- logging related-->
<dependency>
Expand Down Expand Up @@ -55,14 +75,14 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
Expand All @@ -77,6 +97,10 @@
org.checkerframework.*;resolution:=optional,
sun.misc.*;resolution:=optional,
org.openrdf.*;resolution:=optional,
android.os.*;resolution:=optional,
com.google.appengine.api.*;resolution:=optional,
com.google.apphosting.api.*;resolution:=optional,
com.google.thirdparty.publicsuffix.*;resolution:=optional,
*
</Import-Package>
<Private-Package>
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7 changes: 4 additions & 3 deletions evee-protege/evee-protege-elimination-proofs-fame/pom.xml
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Expand Up @@ -62,14 +62,14 @@
<artifactId>maven-compiler-plugin</artifactId>
<version>3.10.1</version>
<configuration>
<source>8</source>
<target>8</target>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.felix</groupId>
<artifactId>maven-bundle-plugin</artifactId>
<version>3.5.0</version>
<version>5.1.9</version>
<extensions>true</extensions>
<configuration>
<instructions>
Expand Down Expand Up @@ -113,6 +113,7 @@
com.google.common.base.*;-split-package:=merge-last,
com.google.common.math.*;-split-package:=merge-last,
com.google.common.primitives.*;-split-package:=merge-last,
com.google.errorprone.annotations.*;-split-package:=merge-last,
</Private-Package>
</instructions>
</configuration>
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