Releases: ersilia-os/ersilia
Releases · ersilia-os/ersilia
February 2026
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
- fixed getting run_columns directly from docker container by @miquelduranfrigola in #1757
- feat: async endpoint testing in test command by @Abellegese in #1758
- fixing catalog inconsistencies by @miquelduranfrigola in #1759
- Log a failure when can_delete is False by @Lehcar in #1776
- Redundant imports fix + fix typo in function name by @bodoque-01 in #1766
- Bump GrantBirki/json-yaml-validate from 3.3.2 to 4.0.0 by @dependabot[bot] in #1774
- Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #1764
- (docs): Fix email link format in Code of Conduct by @BolajiAyodeji in #1773
- Bump peter-evans/slash-command-dispatch from 4.0.0 to 5.0.0 by @dependabot[bot] in #1786
- Bump actions/checkout from 4.2.2 to 6.0.0 by @dependabot[bot] in #1785
- feat: integrating isaura, making harmonized CLI and logger by @Abellegese in #1777
- fix: isaura big cache fetching does not work (#1796) by @Abellegese in #1798
New Contributors
- @patrickwalsh26 made their first contribution in #1727
- @bodoque-01 made their first contribution in #1766
- @BolajiAyodeji made their first contribution in #1773
Full Changelog: v0.1.47...v0.1.54
January 2026
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
- fixed getting run_columns directly from docker container by @miquelduranfrigola in #1757
- feat: async endpoint testing in test command by @Abellegese in #1758
- fixing catalog inconsistencies by @miquelduranfrigola in #1759
- Log a failure when can_delete is False by @Lehcar in #1776
- Redundant imports fix + fix typo in function name by @bodoque-01 in #1766
- Bump GrantBirki/json-yaml-validate from 3.3.2 to 4.0.0 by @dependabot[bot] in #1774
- Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #1764
- (docs): Fix email link format in Code of Conduct by @BolajiAyodeji in #1773
- Bump peter-evans/slash-command-dispatch from 4.0.0 to 5.0.0 by @dependabot[bot] in #1786
- Bump actions/checkout from 4.2.2 to 6.0.0 by @dependabot[bot] in #1785
- feat: integrating isaura, making harmonized CLI and logger by @Abellegese in #1777
New Contributors
- @patrickwalsh26 made their first contribution in #1727
- @bodoque-01 made their first contribution in #1766
- @BolajiAyodeji made their first contribution in #1773
Full Changelog: v0.1.47...v0.1.53
December 2025
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
- fixed getting run_columns directly from docker container by @miquelduranfrigola in #1757
- feat: async endpoint testing in test command by @Abellegese in #1758
- fixing catalog inconsistencies by @miquelduranfrigola in #1759
- Log a failure when can_delete is False by @Lehcar in #1776
- Redundant imports fix + fix typo in function name by @bodoque007 in #1766
- Bump GrantBirki/json-yaml-validate from 3.3.2 to 4.0.0 by @dependabot[bot] in #1774
- Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #1764
- (docs): Fix email link format in Code of Conduct by @BolajiAyodeji in #1773
New Contributors
- @patrickwalsh26 made their first contribution in #1727
- @bodoque007 made their first contribution in #1766
- @BolajiAyodeji made their first contribution in #1773
Full Changelog: v0.1.47...v0.1.52
November 2025
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
- fixed getting run_columns directly from docker container by @miquelduranfrigola in #1757
- feat: async endpoint testing in test command by @Abellegese in #1758
- fixing catalog inconsistencies by @miquelduranfrigola in #1759
New Contributors
- @patrickwalsh26 made their first contribution in #1727
Full Changelog: v0.1.47...v0.1.51
October 2025
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
- fixed getting run_columns directly from docker container by @miquelduranfrigola in #1757
- feat: async endpoint testing in test command by @Abellegese in #1758
- fixing catalog inconsistencies by @miquelduranfrigola in #1759
- hotfix: skipping zairchem models in the catalog command by @Abellegese in #1762
New Contributors
- @patrickwalsh26 made their first contribution in #1727
Full Changelog: v0.1.47...v0.1.50
September 2025
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
- hotfix: missing keys in final json report (#1752) by @Abellegese in #1753
- hotfix: using conda run for exectuing any conda related command by @Abellegese in #1755
New Contributors
- @patrickwalsh26 made their first contribution in #1727
Full Changelog: v0.1.47...v0.1.49
September 2025
What's Changed
- Api branch by @patrickwalsh26 in #1727
- API Fixes by @patrickwalsh26 in #1729
- build(deps): bump actions/upload-artifact from 4.5.0 to 4.6.2 by @dependabot[bot] in #1668
- build(deps): bump GrantBirki/json-yaml-validate from 3.3.0 to 3.3.2 by @dependabot[bot] in #1667
- build(deps): bump GrantBirki/comment from 2.1.0 to 2.1.1 by @dependabot[bot] in #1666
- removed smiles mentions and changed to input or data by @GemmaTuron in #1736
- refactor API by @GemmaTuron in #1739
- Add column file copy functionality from container, add check f… by @Abellegese in #1748
- Chore/test command revision by @Abellegese in #1749
New Contributors
- @patrickwalsh26 made their first contribution in #1727
Full Changelog: v0.1.47...v0.1.48
August 2025
What's Changed
- Model incorporation debugging by @miquelduranfrigola in #1672
- added exceptions for null publication and source code by @miquelduranfrigola in #1678
- add exception for contributor, it can be none by @miquelduranfrigola in #1679
- update base information with dockerhub by @miquelduranfrigola in #1680
- docker architecture escaping and more by @miquelduranfrigola in #1681
- build(deps): bump GrantBirki/issue-template-parser from 7.0.3 to 7.0.4 by @dependabot[bot] in #1669
- Deprecating support for string and list input types in Ersilia by @Abellegese in #1706
- remove input shape by @GemmaTuron in #1718
- bugfixes test command by @GemmaTuron in #1720
- Updating links to AirTable and S3 by @miquelduranfrigola in #1719
- fix: binray splitting, input missing in output, string wrapper issue by @Abellegese in #1717
- Fix issues by @Abellegese in #1723
- Fix issues with BI class by @Abellegese in #1725
Full Changelog: v0.1.45...v0.1.47
July 2025
What's Changed
- Model incorporation debugging by @miquelduranfrigola in #1672
- added exceptions for null publication and source code by @miquelduranfrigola in #1678
- add exception for contributor, it can be none by @miquelduranfrigola in #1679
- update base information with dockerhub by @miquelduranfrigola in #1680
- docker architecture escaping and more by @miquelduranfrigola in #1681
- build(deps): bump GrantBirki/issue-template-parser from 7.0.3 to 7.0.4 by @dependabot in #1669
- Deprecating support for string and list input types in Ersilia by @Abellegese in #1706
- Deep command failure, adding failed test breakpoint in playgr… by @Abellegese in #1708
Full Changelog: v0.1.45...v0.1.46
June 2025
What's Changed
- Fix parsing issue and few other fixes in test command by @Abellegese in #1636
- Bump actions/checkout from 3.5.3 to 4.2.2 by @dependabot in #1637
- Bump actions/setup-python from 4 to 5 by @dependabot in #1638
- Bump GrantBirki/json-yaml-validate from 3.2.1 to 3.3.0 by @dependabot in #1639
- Fix precalculation by @Abellegese in #1642
- Implementing deterministic sampling in example command and refactoring deep performance input interval by @Abellegese in #1626
- fix computational performance fields by @GemmaTuron in #1643
- remove pack method from metadata by @GemmaTuron in #1645
- Hotfix/test command by @Abellegese in #1646
- Updates test command by @miquelduranfrigola in #1658
- Splunk monitoring including tracking country and use case by @miquelduranfrigola in #1659
- Fix caching by @Abellegese in #1661
Full Changelog: v0.1.44...v0.1.45