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QMol_DFT_Vx_XX_conv
Exact exchange (XX) potential and functional.
Use QMol_DFT_Vx_XX_conv to describe the exact exchange potential and functional. For given Kohn-Sham orbitals
where
Self-interaction correction has no effect on QMol_DFT_Vx_XX_conv.
The QMol_DFT_Vx_XX_conv class defines the following public get-access properties; each can be changed using the set method:
Electron-electron interaction potential [ function handle (default @(x) 1./sqrt(x.^2+2) ) ]
- This is the potential
${\mathcal{V}}_{{\mathrm{e}\mathrm{e}}}$ used in Eqs. (1) and (2). - The signature for the (effective) electron-electron interaction potential should be
V = funV(x), where the outputVhas the same shape as the input vectorxand contains element-wise values of the potential at the query pointsx. - Because the computation of the exact-exchange potential and energy is performed over an (internally handled) extended domain, a user-defined discretization of the electron-electron interaction potential is not supported (only function handle).
These properties cannot be edited with the set method.
Whether the potential object is properly initialized. This is used throughout the QMol-grid package to check that the potential object holds meaningful information and is ready for use. Changing its isSpinPol may cause simulations to fail or produce erroneous results.
Flavor of DFT functional [ 'XX' ]
- This is a constant property, which can be used by other components of the QMol-grid package to determine the flavor/type of functional a given object belongs to.
Create an exact-exchange object with empty class properties.
obj = QMol_DFT_Vx_XX_conv;Create an exact-exchange object with the name properties set to the specified value. Several name-value pairs can be specified consecutively. Suitable name is any of the electron-interaction potential model and is case insensitive.
obj = QMol_DFT_Vx_XX_conv(name1,value1);
obj = QMol_DFT_Vx_XX_conv(name1,value1,name2,value2,___);Update the name properties of an exact-exchange object to the specified value. Several name-value pairs can be specified consecutively. Suitable name is any of the electron-interaction potential model and is case insensitive.
obj.set(name1,value1);
obj.set(name1,value1,name2,value2,___);This is the common name-value pair assignment method used throughout the QMol-grid package. The set method also reset the class. After running, the set property updates the isInitialized flag to a false value.
Reset the object by deleting/re-initializing all run-time properties of the class and updating the isInitialized flag to false.
obj.reset;- This is the common
resetmethod available to all classes throughout the QMol-grid package.
Clear all class properties.
obj.clear;Clear a specific set of the class properties. Suitable name is any of the electron-interaction potential model and is case insensitive.
obj.clear(name1,name2,___);This is the common clear method available to all classes throughout the QMol-grid package. The clear method also reset the class. The clear method can be used to delete specific properties before saving an instance of the QMol_DFT_Vx_XX_conv class.
Initialize a QMol_DFT_Vx_XX_conv object and set the isInitialized flag to true.
obj.initialize(DFT);-
DFTis the DFT-model handle object, i.e.,QMol_DFT_spinPolorQMol_DFT_spinRes, to which the LDA Slater exchange functional is attached. - To avoid any mismatch in internal properties,
initializefirstresetthe object before performing the initialization.
Get an estimate of the memory held by a QMol_DFT_Vx_XX_conv object with either
mem = obj.getMemoryProfile;
mem = obj.getMemoryProfile(false);- The object must be properly
initialized with a domain discretization. - The estimate only includes the discretization of member components on the domain grid and ignores other (small) properties.
- The output
memis the estimated size in bytes.
Additionally display the detail of the memory footprint with
mem = obj.getMemoryProfile(true);Display the run-time documentation for the specific configuration of a QMol_DFT_Vx_XX_conv object.
ref = obj.showDocumentation;- The output
refis a cell vector containing the list of references to be included in the bibliography.
Before using any of its exact-exchange functional methods, the QMol_DFT_Vx_XX_conv object must be properly initialized.
For spin-restricted models, apply the exact-exchange potential operator to a wave function as in Eq. (2).
Hp = obj.applyPotential(p);-
Note: The exact-exchange object must have its potential kernel properly set beforehand with
setPotentialKernel.applyPotentialdoes not perform or check for this initialization. -
pandHpare bothnumel(disc.xspan)-by-1vectors respectively containing the discretization of the orbital to which the potential should be applied and its result.
For spin-polarized models, apply the up- and down-spin exact-exchange potential operators to a wave function, as in Eq. (2), respectively with
Hp = obj.applyPotential(p,true);
Hp = obj.applyPotential(p,false);-
Note: The exact-exchange object must have its potential kernel properly set beforehand with
setPotentialKernel.applyPotentialdoes not perform or check for this initialization. -
pandHpare bothnumel(disc.xspan)-by-1vectors respectively containing the discretization of the orbital to which the potential should be applied and its result.
Warning: applyPotentialDerivative is still an experimental feature and untested. Its use is discouraged.
The derivative of the exact-exchange potential is seldom used as-is, but most often appears in the definition of various observables. applyPotentialDerivative provides a common interface for these calculations with
DVp = obj.applyPotentialDerivative(opt,p); % Spin restricted
DVp = obj.applyPotentialDerivative(opt,p,true); % Spin polarized, up-spin component
DVp = obj.applyPotentialDerivative(opt,p,false); % Spin polarized, up-spin component-
Note: The exact-exchange object must have its potential kernel properly set beforehand with
setPotentialKernel.applyPotentialDerivativedoes not perform or check for this initialization. -
optis a character array specifying the type of calculation to be performed (see next). The type and shape of the outputDVpis dictated by this option. -
pis anumel(disc.xspan)-by-1vector containing the discretization of the orbital to which the potential should be applied. - For spin-polarized models only, the third argument specify whether the up- (
true) or down-spin (false) exact-exchange potential derivative should be used.
opt = 'dipacc' computes the unweighted dipole-acceleration contribution from the input orbital, defined as
Note that while the total dipole acceleration from the exact-exchange vanishes DVp is a real-valued scalar.
Get the exact-energy of Eq. (1) for the parent DFT object.
E = obj.getEnergy;- This computes the exchange energy associated with the Kohn-Sham orbitals in the parent DFT model.
- The output scalar
Econtains the numerical evaluation of the exchange energy of Eq. (2). - This is equivalent to, but more efficient than,
obj.getEnergy(DFT.getDensity)withDFTbeing the same DFT-model handle object used toinitializethe external-potential object.
Get the exact-exchange potential for the parent DFT object.
V = obj.getPotential;- This creates a new Kohn-Sham potential object
Vin which the exact-exchange potential handle is stored. Note that only the handle is returned and the action of the exact-exchange potential on a given one-electron wave function, following Eq. (2), is computed withapplyPotential. - Note that
getPotentialdoes notinitializethe output potential objectV.
Overwrite the exact-exchange potential in an existing Kohn-Sham potential object with any of
obj.getPotential([],V);
obj.getPotential([],V,false);- Note that the first argument
[]is required (to provide a common interface with other DFT functionals). - This is similar to above without creating a new Kohn-Sham potential object.
- Any content in the input object
Vis erased before assigning the exact-exchange potential to it.
Add the exact-exchange potential to an existing Kohn-Sham potential object.
obj.getPotential([],V,true); % use parent DFT density- This is formally equivalent to the in-place addition
$\mathcal{V}\gets \mathcal{V}+{\mathcal{V}}_{{\mathrm{X}\mathrm{X}}}$ . - Likewise, the first argument
[]is required (to provide a common interface with other DFT functionals).
Get the exact-exchange potential gradient for the parent DFT object with either
DV = obj.getPotentialDerivative(1);- This creates a new Kohn-Sham potential gradient object
DVin which the exact-exchange potential gradient handle is stored. Note that only the handle is returned and the action of the exact-exchange potential gradient on a given one-electron wave function is computed withapplyPotentialDerivative. - Note that
getPotentialDerivativedoes notinitializethe output potential gradient objectDV. - Note that the first input
1is required. This is to provide a uniform signature with higher dimension where the dimension along which the gradient component is considered must be specified.
Overwrite the exact-exchange potential gradient in an existing Kohn-Sham potential gradient object with any of
obj.getPotentialDerivative(1,[],DV);
obj.getPotentialDerivative(1,[],DV,false);- Note that the second argument
[]is required (to provide a common interface with other DFT functionals). - This is similar to above without creating a new Kohn-Sham potential gradient object.
- Any content in the input object
DVis erased before assigning the exact-exchange potential gradient to it.
Add the exact-exchange potential gradient to an existing Kohn-Sham potential gradient object.
obj.getPotentialDerivative(1,[],DV,true);- This is formally equivalent to the in-place addition
$\nabla \mathcal{V}\gets \nabla \mathcal{V}+\nabla {\mathcal{V}}_{{\mathrm{X}\mathrm{X}}}$ . - Likewise, the first argument
[]is required (to provide a common interface with other DFT functionals).
Set the kernel for the applyPotential, and applyPotentialDerivative methods.
obj.setPotentialKernel;- This creates a local copy of the parent DFT model (used to
initializethe object), which is temporarily stored in the object. This copy is then used to when computing the action of the exact-exchange potential (applyPotential) or the action its derivative (applyPotentialDerivative) onto one-electron wave functions. - This local copy is required because, e.g., after applying the action of the exact-exchange potential onto a Kohn-Sham orbital with Eq. (2) the exact-exchange potential operator is changed, which is often not the intended feature inside SCF or propagation intermediate steps.
Create a discretization domain.
disc = QMol_disc('xspan',-20:.1:25);Create an exact-exchange functional object with default parameters.
V_X = QMol_DFT_Vx_XX_conv;Create a minimal DFT-model object required to initialize the exchange functional class and display the run-time documentation.
DFT = QMol_DFT_spinRes('discretization',disc,'occupation',[1 1 1]);
disc.initialize(DFT);
V_X.initialize(DFT);
V_X.showDocumentation;yielding
* Exact-exchange functional explicit convolution
Interaction pot. = @(x)1./sqrt(x.^2+2) (elec.-elec.)
V-01.21.000 (06/17/2024) F. Mauger
Display the estimated memory footprint for the object.
V_X.getMemoryProfile(true); * Exact-exchange functional (conv.)
> interaction potential 7.0 KB
> kernel 21.1 KB
Looking at Eq. (2) we see that, at minimum, the DFT model should define occupation parameters and a set of Kohn-Sham orbitals.
% Create Kohn-Sham orbitals
x = disc.xspan(:);
dx = x(2)-x(1);
p = [exp(-x.^2*.25/4),x.*exp(-x.^2*.25/4),x.^2.*exp(-x.^2*.25/4)];
for k = 1:3
for l = 1:k-1
p(:,k) = p(:,k) - p(:,l)*sum(p(:,k).*p(:,l))*dx; % orthonormalize
end
p(:,k) = DFT.disc.DFT_normalizeOrbital(p(:,k)); % normalize
end
KSO = DFT.discretization.DFT_allocateOrbital(3); % create orbital object
KSO.set('orbital',p); % assign orbitals
KSO.initialize(disc);
% Attach the hand-made Kohn-Sham orbitals to the DFT object
DFT.set('occupation',[1 1 1],'orbital',KSO);
disc.initialize(DFT); % for good measure, re-initialize everything
V_X.initialize(DFT);For good measure, the beginning of the first part of the code above orthonormalizes the set of "hand-made" Kohn-Sham orbitals. Finally, we compute the action of the exact-exchange potential on a given one-electron wave function and plot the result.
% Apply the exact-exchange potential on a wave function
v = (x(:)-1).*exp(-(x(:)-2).^2*.25/1.5^2); % define one-electron wave function
v = DFT.disc.DFT_normalizeOrbital(v);
V_X.setPotentialKernel; % initialize the potential kernel
% Plot the results
figure; hold on
plot(disc.xspan,v,'-','LineWidth',2,'DisplayName','\phi')
plot(disc.xspan,V_X.applyPotential(v),'-','LineWidth',2','DisplayName','V_{XX}\phi')
xlabel('position (a.u.)'); xlim(disc.xspan([1 end]));
ylabel('wave function')
legend show
Run the test suite for the class in normal or summary mode respectively with
QMol_test.test('DFT_Vx_XX_conv');
QMol_test.test('-summary','DFT_Vx_XX_conv');QMol_DFT_Vx_XX_conv defines a handful of additional transient/constant and hidden properties to facilitate and speed up computations. These properties cannot be edited with the set method, nor by any function outside of the object (SetAccess=private attribute).
DFT-model object [ [] (default) | QMol_DFT_spinPol handle object | QMol_DFT_spinRes handle object ]
- This is a copy of the DFT-model handle object passed to
initialize. - Un-initialized
QMol_DFT_Vx_XX_convobjects, i.e.,isInitialized == false, have emptyDFT. - For practical reasons,
DFTis editable byQMol_DFTclasses.
For spin-restricted models, Kohn-Sham orbital kernel [ [] (default) | numel(DFT.disc.x))-by-numel(DFT.occ) matrix]
- This is a copy of the discretization of Kohn-Sham orbitals on the domain.
- For basis-set models, the kernel holds a reconstruction of the Kohn-Sham orbitals on the underlying discretization grid.
- It is set by
setPotentialKernel.
For spin-polarized models, up-spin Kohn-Sham orbital kernel [ [] (default) | numel(DFT.disc.x))-by-numel(DFT.occ{1}) matrix]
- This is a copy of the discretization of Kohn-Sham orbitals on the domain.
- For basis-set models, the kernel holds a reconstruction of the Kohn-Sham orbitals on the underlying discretization grid.
- It is set by
setPotentialKernel.
For spin-polarized models, up-spin Kohn-Sham orbital kernel [ [] (default) | numel(DFT.disc.x))-by-numel(DFT.occ{1}) matrix]
- This is a copy of the discretization of Kohn-Sham orbitals on the domain.
- For basis-set models, the kernel holds a reconstruction of the Kohn-Sham orbitals on the underlying discretization grid.
- It is set by
setPotentialKernel.
Population threshold [ nonnegative scalar (default 1e-10) ]
- Orbitals that have a population coefficient smaller than
tolare ignored in computations of the energy of Eq. (1) withgetEnergyand of the exact-exchange potential of Eq. (2) withgetPotential(and this feature gets automatically included ingetPotentialDerivative).
While QMol_DFT_Vx_XX_conv does not define any self-interaction correction scheme (SIC) -- XX does not suffer from self-interaction errors -- to provide a common interface with other DFT functional objects the initialize method supports passing a SIC scheme as a second argument
obj.initialize(DFT,SIC);- The
SICflag is ignored in the initialization (and all calculations in the class).
The exact-exchange energy of Eq. (1) is defined from Kohn-Sham orbitals, not from the one-body density as is common in DFT functionals. To provide a common interface with other DFT functional objects, the getEnergy method supports passing a one-body density object argument.
E = obj.getEnergy(rho);- The one-body density object
rhois ignored and the exact-exchange energy is computed like inE = obj.getEnergy(); i.e., using the Kohn-Sham orbitals in the parent DFT model.
The exact-exchange potential of Eq. (2) is defined from Kohn-Sham orbitals, not from the one-body density as is common in DFT functionals. To provide a common interface with other DFT functional objects, the getPotential method supports passing a one-body density object argument.
V = obj.getPotential(rho); % create new potential object
obj.getPotential(rho,V); % use existing potential object
obj.getPotential(rho,V,false);- The one-body density object
rhois ignored and the exact-exchange potential is returned like inV = obj.getPotential().
The exact-exchange potential of Eq. (2), and thus its gradient, is defined from Kohn-Sham orbitals, not from the one-body density as is common in DFT functionals. To provide a common interface with other DFT functional objects, the getPotentialDerivative method supports passing a one-body density object argument.
DV = obj.getPotentialDerivative(1,rho); % create new potential object
obj.getPotentialDerivative(1,rho,DV); % use existing potential object
obj.getPotentialDerivative(1,rho,DV,false);- The one-body density object
rhois ignored and the exact-exchange potential is returned like inDV = obj.getPotentialDerivative().
[Baker 2015] T.E. Baker, E.M. Stoudenmire, L.O. Wagner, K. Burke, and S.R. White, "One-dimensional mimicking of electronic structure: The case for exponentials," Physical Review B 91, 235141 (2015).
[Mauger 2024] F. Mauger, C. Chandre, M.B. Gaarde, K. Lopata, and K.J. Schafer, "Hamiltonian formulation and symplectic split-operator schemes for time-dependent density-functional-theory equations of electron dynamics in molecules," Communications in Nonlinear Science and Numerical Simulation 129, 107685 (2024).
The results displayed in this documentation page were generated using version 01.21 of the QMol-grid package.
-
QMol_DFT_Vx_XX_convwas introduced in version 01.00. -
getMemoryProfilewas introduced in version 01.10.
This wiki is a copy of the documentation provided with the QMol-grid package (accessible in MATLAB documentation, via the "Supplemental Software" section).
Copyright © 2024, Francois Mauger, all right reserved.
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Tutorials
- Tutorial 1: Schrödinger-equation ground state
- Tutorial 2: Schrödinger-equation input and output
- Tutorial 3: Time-dependent Schrödinger equation
- Tutorial 4: Time-dependent Schrödinger-equation input and output
- Tutorial 5: Density-functional theory ground state
- Tutorial 6: Time-dependent density-functional theory
- Tutorial 7: Time-dependent density-functional theory input and output