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Updating workflows/VGP-assembly-v2/Assembly-decontamination-VGP9 from 1.2 to 1.3 #1067

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planemo-autoupdate:workflows/VGP-assembly-v2/Assembly-decontamination-VGP9
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Updating workflows/VGP-assembly-v2/Assembly-decontamination-VGP9 from 1.2 to 1.3 #1067
gxydevbot wants to merge 1 commit intogalaxyproject:mainfrom
planemo-autoupdate:workflows/VGP-assembly-v2/Assembly-decontamination-VGP9

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Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/Assembly-decontamination-VGP9. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.5+galaxy3
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.5+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.5+galaxy3
  • toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.5+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.5+galaxy3

The workflow release number has been updated from 1.2 to 1.3.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

@gxydevbot gxydevbot changed the title Updating workflows/VGP-assembly-v2/Assembly-decontamination-VGP9 from 1.2 to 1.3 Updating workflows/VGP-assembly-v2/Assembly-decontamination-VGP9 from 1.2 to 1.3 Jan 26, 2026
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the workflows/VGP-assembly-v2/Assembly-decontamination-VGP9 branch from d3f92b5 to 22bb20c Compare January 26, 2026 05:07
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