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deepvariant: add cram support#7672

Merged
bernt-matthias merged 4 commits intogalaxyproject:mainfrom
bernt-matthias:deepvariant-cram
Feb 12, 2026
Merged

deepvariant: add cram support#7672
bernt-matthias merged 4 commits intogalaxyproject:mainfrom
bernt-matthias:deepvariant-cram

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@bernt-matthias
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fixes: #7244

test was already there (but also used implicit conversion)

FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

There are two labels that allow to ignore specific (false positive) tool linter errors:

  • skip-version-check: Use it if only a subset of the tools has been updated in a suite.
  • skip-url-check: Use it if github CI sees 403 errors, but the URLs work.

fixes: galaxyproject#7244

test was already there (but also used implicit conversion)
@bernt-matthias bernt-matthias merged commit 07e6d5d into galaxyproject:main Feb 12, 2026
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@bernt-matthias bernt-matthias deleted the deepvariant-cram branch February 12, 2026 08:19
@mvdbeek
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mvdbeek commented Feb 12, 2026

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Add cram support for deepvariant

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