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Pathways2GO Version 1

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@goodb goodb released this 26 Oct 18:48
· 173 commits to master since this release
v1.0.0
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This release provides the ability to convert the Reactome knowledge base into a collection of GO-CAM RDF models. The Reactome content must be accessed in BioPAX Level 3 format. For example, downloaded from https://reactome.org/download/current/biopax.zip.

The jar file provides command line access to generate an ontology of all physical entities in Reactome as well as generating the GO-CAMs for each (non-disease) pathway. The models are dependent on importing the physical entity ontology as well as the ontologies imported by go-lego.owl (as with any other GO-CAM).

This code may work on other BioPAX level 3 inputs but has only been tested thoroughly with Reactome.

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