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Pull requests: ksahlin/strobealign

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8 Open 349 Closed
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Pull requests list

Re-order command-line help sections
#555 opened Feb 4, 2026 by marcelm Loading…
Non-canonical syncmers
#546 opened Jan 30, 2026 by marcelm • Draft
1
Piecewise
#533 opened Dec 19, 2025 by NicolasBuchin Loading…
2 tasks
better hamming check using scoring parameters
#518 opened Sep 16, 2025 by NicolasBuchin Loading…
Only keeping strobemer matches with minimum strobes distance difference
#517 opened Sep 13, 2025 by NicolasBuchin Loading…
1
Experiment: Use a bit in RefRandstrobe to indicate whether it is filtered
#466 opened Dec 4, 2024 by marcelm Loading…
3
Use ksw2 to align soft-clipped ends from ungapped alignment
#382 opened Dec 17, 2023 by marcelm Loading…
1
7
Alignment with ksw2/WFA2 - Take 2
#251 opened Mar 6, 2023 by marcelm Loading…
2 of 3 tasks
6
ProTip! What’s not been updated in a month: updated:<2026-01-18.