Release 1.11.0

See https://docs.lamin.ai/changelog/2025#db-1-11-0-bionty-1-7-0-wetlab-1-5-0

What's Changed

• 🏗️ Always import the entire public API & enable switching instances in the same Python session by @falexwolf in #2851
• 🚸 Define __all__ by @falexwolf in #3019
• ♻️ Adapt to new convention for tracking R environments by @falexwolf in #3020
• 🐛 Fix duplicated migration, loading issues, and unavailable instances, all introduced in the "always-connect PR" by @falexwolf in #3021
• 🚸 Soft delete everywhere by @falexwolf in #3022
• 🐛 Fix missing ProjectRecord model in schema json by @fredericenard in #3024
• 🚸 Better lamin delete and getting versioned entities from trash by @falexwolf in #3025
• 💚 Fix curator tests by @Zethson in #3028
• ✨ Support more organisms in CELLxGENE by @Zethson in #3026
• ✨ Support AnnDataAccessor for AnnDataCurator by @Zethson in #2980
• 🔒 Fine-grained storage access management via spaces by @falexwolf in #3023
• ✨ Unstructured slot validation of scverse datastructures by @Zethson in #3029
• 🩹 Do not reset latest version when deleting latest versions of folder artifacts by @Koncopd in #3031
• ♻️ Amend storage access tests by @falexwolf in #3032
• 🐛 Fix adding a column to a cloud AnnData object with consolidated metadata by @Koncopd in #3033
• ✨ Add Feature.from_dict() by @Zethson in #3030
• ✨ Allow getting artifacts by path via Artifact.get(path="...") by @Koncopd in #3034
• ♻️ Rename .df() to .to_dataframe() by @Koncopd in #3035
• ♻️ Rename .list() to .to_list(), .from_df() to .from_dataframe() by @Koncopd in #3038
• ✨ Support py:percent notebooks by @Koncopd in #3041
• 💚 Adapt permissions tests setup by @Koncopd in #3042
• ✨ Parse and populate title in r notebooks on lamin save by @Koncopd in #3043
• 💚 Proper storage cleanup in test_permissions by @Koncopd in #3044
• 💚 Proper storage cleanup in test_permissions 2 by @Koncopd in #3045
• ⬆️ Upgrade fsspec to 2025.7.0 by @Koncopd in #3047
• ✨ Support validating linked features: adding a schema argument to .features.add_values() by @Zethson in #3039
• 🐛 Fix queryset.to_dataframe(include=...) with using and annotations by @Koncopd in #3053
• ✨ Add support for CELLxGENE Schema 6.0.0 by @Zethson in #3000
• ✨ Implement lazy artifact saving for streaming data by @Koncopd in #3051
• 📝 Improve documentation for "slots" by @Zethson in #3048
• ♻️ Make storage space test more robust by @falexwolf in #3054
• 📝 Add validating linked features guide & examples by @Zethson in #3052
• ✨ Allow to update reports of notebooks on lamin save by @Koncopd in #3050
• 📝 Add documentation on how to use ln.Artifact.from_lazy by @Koncopd in #3056
• ✨ Support validating attrs of Pandas DataFrames by @Zethson in #3036
• 📝 Add croissant example to TOC by @Zethson in #3046
• 🐛 Transfer feature based on uid instead of name by @sunnyosun in #2998
• 🗃️ Record types can no longer inherit from parent types that have a schema by @chaichontat in #3015
• 🚸 Print warning when creating spaces on SQLite or local instances by @falexwolf in #3027
• ✨ Add RecordUser link model by @falexwolf in #3057
• ♻️ Refactor and prettify login() and lamin login by @falexwolf in #3058
• 🐛 Fix ambiguity in is_valid_record_type by @Koncopd in #3059
• 🐛 Fix cellxgene deprecated save call by @Zethson in #3062
• 🏗️ Include wetlab & bionty in lamindb, upgrade to latest versions by @falexwolf in #3063
• 🐛 Include a project feature in a sheet and test it by @falexwolf in #3064
• 🏗️ Pause maintenance of clinicore by @falexwolf in #3065
• ♻️ Refactor croissant file mapping by @falexwolf in #2999
• ✅ Test setting search_path in RLS functions by @Koncopd in #3067
• ♻️ Improve fixture & examples design by @Zethson in #3049
• 🐛 Update is_latest also upon soft delete by @falexwolf in #3068
• ♻️ Ensure all write_text() calls use UTF8 by @falexwolf in #3069
• ♻️ Link RecordUser to ManyToManyField by @falexwolf in #3071
• 🐛 Fix version family mapping when registering existing files and add more extensive tests for Croissant file parameterization by @falexwolf in #3070
• ✨ Query by feature across instances by @Koncopd in #3061
• 🐛 Fix space warning on sqlite and local instances by @Koncopd in #3075
• ♻️ Extend soft deletes to querysets by @Zethson in #3073
• 🏗️ Integrate the 3 small Jupyter-related dependencies by @falexwolf in #3076
• 🐛 Better warnings during queryset soft delete by @falexwolf in #3077

New Contributors

• @chaichontat made their first contribution in #3015

Full Changelog: 1.10.2...1.11.0