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Train model in Fast-Higashi and impute in Higashi with a much higher resolution

Status: Open.

#67 In ma-compbio/Higashi;

· ypauling opened on Jan 19, 2026

TADs Boundary

Status: Open.

#66 In ma-compbio/Higashi;

· Accompany0313 opened on Jun 17, 2025

call TADs

Status: Open.

#58 In ma-compbio/Higashi;

· Accompany0313 opened on Nov 25, 2024

impute some of these cells with the trained model

Status: Open.

#57 In ma-compbio/Higashi;

· Accompany0313 opened on Sep 15, 2024

RuntimeError: received 0 items of ancdata

Status: Open.

#48 In ma-compbio/Higashi;

· PeiKeGUO opened on Mar 22, 2024

Stop with OSError when run "higashi_model.train_for_imputation_nbr_0()"

Status: Open.

#42 In ma-compbio/Higashi;

· yufanzhouonline opened on Aug 4, 2023

What are the configure options mean?

Status: Open.

#41 In ma-compbio/Higashi;

· khsjh opened on Jul 24, 2023

The main_cell.py is so slow

Status: Open.

#39 In ma-compbio/Higashi;

· yangfeizZZ opened on Jun 8, 2023

Error running simulated data

Status: Open.

#38 In ma-compbio/Higashi;

· mxw010 opened on May 16, 2023

higashi.Higashi_backend.Modules import error

Status: Open.

#36 In ma-compbio/Higashi;

· bio-xtt opened on May 12, 2023

Error running Ramani data

Status: Open.

#34 In ma-compbio/Higashi;

· mxw010 opened on Apr 25, 2023