v0.1.11

What's Changed

• Add Central Core Myopathy disorder entry by @kevinschaper in #319
• Add Morgagni-Stewart-Morel Syndrome by @AO33 in #284
• Add CADASIL disorder entry by @Vibhorgupta31 in #271
• 📄 Regenerate pages and dashboard (2026-02-14) by @github-actions[bot] in #341
• Add sort by creation or updated date by @caufieldjh in #345
• Curate Hereditary Spherocytosis by @cmungall in #350
• Curate Alpha Thalassemia by @cmungall in #349
• Add Temple-Baraitser syndrome disorder file by @caufieldjh in #344
• Curate Diamond-Blackfan Anemia by @cmungall in #351
• Enhance Fanconi Anemia and CML entries by @cmungall in #352
• 📄 Regenerate pages and dashboard (2026-02-16) by @github-actions[bot] in #355
• Curation: align supports levels across disorder evidence by @cmungall in #357
• Add remaining reference cache, research, src, and test updates by @cmungall in #362
• 📄 Regenerate pages and dashboard (2026-02-16) by @github-actions[bot] in #363
• Add Houge-Janssens Syndrome by @caufieldjh in #347

New Contributors

• @AO33 made their first contribution in #284

Full Changelog: v0.1.10...v0.1.11

v0.1.10

What's Changed

• Fix for Unknown records (from history files) shown in the browser and QC dashboard by @caufieldjh in #301
• Add Kummell disease by @caufieldjh in #270
• Add metadata to downstream causal edges by @cmungall in #290
• 🤖 Weekly Compliance Fix: Add UBERON anatomical locations to IgA Nephropathy (2026-02-11) by @claude[bot] in #300
• 🤖 Weekly Compliance Fix: Add UBERON anatomical locations to Chronic Kidney Disease (2026-02-11) by @claude[bot] in #299
• 🤖 Weekly Compliance Fix: Add UBERON anatomical locations to Glaucoma (2026-02-11) by @claude[bot] in #298
• 🤖 Weekly Compliance Fix: Add UBERON anatomical locations to Liver Cirrhosis (2026-02-11) by @claude[bot] in #297
• 🤖 Weekly Compliance Fix: Add UBERON anatomical locations to GERD (2026-02-11) by @claude[bot] in #296
• Add labyrinthitis by @caufieldjh in #276
• Add Congestive Splenomegaly disorder entry by @kevinschaper in #285
• Bump actions/upload-artifact from 4.6.2 to 6.0.0 by @dependabot[bot] in #225
• Add Joubert syndrome by @caufieldjh in #208
• 📄 Regenerate pages and dashboard (2026-02-12) by @github-actions[bot] in #315
• Remove history pages from rendered HTMLs by @caufieldjh in #318
• 📄 Regenerate pages and dashboard (2026-02-12) by @github-actions[bot] in #317
• create melanoma-DIC comorbidity entry by @katiermullen in #321
• 📄 Regenerate pages and dashboard (2026-02-12) by @github-actions[bot] in #322
• Add 22 skeletal dysplasia entries (Tiers 6-10), completing project by @cmungall in #325
• 📄 Regenerate pages and dashboard (2026-02-13) by @github-actions[bot] in #326
• Add dientamoebiasis by @caufieldjh in #324
• 📄 Regenerate pages and dashboard (2026-02-13) by @github-actions[bot] in #327
• Add banners to indicate resource status by @caufieldjh in #329
• Change UI label from 'Mechanisms' to 'Pathophysiology' by @github-actions[bot] in #335
• Remove case-colliding Holt-Oram page by @kevinschaper in #336
• Clarify evidence_source documents publication evidence type, not curation method by @github-actions[bot] in #334
• Add Empty Nose Syndrome by @caufieldjh in #328
• Add cadmium poisoning by @caufieldjh in #288
• Add CINCA syndrome by @caufieldjh in #279
• Add onboarding documentation for contributors in README and CONTRIBUTING by @github-actions[bot] in #340
• Add arsenic poisoning by @caufieldjh in #293
• Bump actions/download-artifact from 4.3.0 to 7.0.0 by @dependabot[bot] in #226

Full Changelog: v0.1.9...v0.1.10

v0.1.9

Highlight: CF

• CF enhancements by @katiermullen in #291

https://monarch-initiative.github.io/dismech/pages/disorders/Cystic_Fibrosis.html

What's Changed

• Improve causal pathophysiology graphs and add pseudohypoparathyroidism curation by @cmungall in #286
• 📄 Regenerate pages and dashboard (2026-02-10) by @github-actions[bot] in #287
• Add Cogan syndrome by @caufieldjh in #247
• CF enhancements by @katiermullen in #291
• 📄 Regenerate pages and dashboard (2026-02-11) by @github-actions[bot] in #294

New Contributors

• @katiermullen made their first contribution in #291

Full Changelog: v0.1.8...v0.1.9

v0.1.8

highlight: FA entry

92 phenotypes from FA guidelines

One of the most complete phenocams:

What's Changed

• Add Noonan Syndrome with debundled pathophysiology by @cmungall in #245
• Add Laryngotracheoesophageal cleft by @caufieldjh in #237
• Add Danon disease by @sujaypatil96 in #241
• Enhance Wilson Disease entry with expanded pathophysiology and evidence by @cmungall in #251
• Update term caches, add one-up-review skill by @cmungall in #252
• Add 18 skeletal dysplasia disorders by @cmungall in #253
• Add 6 new disorders, update PKD/Tay-Sachs/Tetanus by @cmungall in #254
• Add Ainhum by @caufieldjh in #248
• Reduce Claude review pile-ons by @cmungall in #268
• Expand Inheritance class in schema by @caufieldjh in #269
• Add Salla disease by @caufieldjh in #250
• Add Meckel Syndrome by @caufieldjh in #232
• Add Refeeding Syndrome by @caufieldjh in #224
• Fixes for page rendering KeyError when disorder name is not present by @caufieldjh in #275
• Bump astral-sh/setup-uv from 5 to 7 by @dependabot[bot] in #227
• Add Scimitar syndrome by @caufieldjh in #273
• 📄 Regenerate pages and dashboard (2026-02-08) by @github-actions[bot] in #277
• Update koza dependency to 2.2.0 by @kevinschaper in #280
• Comprehensive Fanconi Anemia enhancements and multi-scheme subtype classification by @cmungall in #278
• 📄 Regenerate pages and dashboard (2026-02-09) by @github-actions[bot] in #281
• Regenerate pages with HPO category grouping by @cmungall in #283

New Contributors

• @sujaypatil96 made their first contribution in #241

Full Changelog: v0.1.7...v0.1.8

v0.1.7

Mechanism comparison browser

What's Changed

• Add Akinetopsia by @caufieldjh in #231
• Enable just fetch reference to take a list of ids by @caufieldjh in #242
• 🤖 Weekly Compliance Fixes (2026-02-03): Bipolar Disorder Cell Types by @claude[bot] in #240
• 🤖 Weekly Compliance Fixes (2026-02-03): Major Depressive Disorder Cell Types by @claude[bot] in #239
• 🤖 Weekly Compliance Fixes (2026-02-03): Generalized Anxiety Disorder Cell Types by @claude[bot] in #238
• Add Gorlin Syndrome (NBCCS) disorder entry by @Vibhorgupta31 in #235
• Replace Brodmann area 19 with secondary visual cortex for V5/MT (issue #233) by @github-actions[bot] in #234
• Add mechanism-level embeddings and cell types space by @cmungall in #244

New Contributors

• @Vibhorgupta31 made their first contribution in #235

Full Changelog: v0.1.6...v0.1.7

v0.1.6

Comorbidity

Adding example comorbities and disease trajectories

Example
https://monarch-initiative.github.io/dismech/pages/comorbidities/com_Atopic_Dermatitis__Type_2_Diabetes_Mellitus.html

What's Changed

• Add KGX edge export via Koza by @kevinschaper in #145
• Add Wissler syndrome by @caufieldjh in #200
• Add projman skill and standardize project file naming by @cmungall in #221
• 📄 Regenerate pages and dashboard (2026-01-31) by @github-actions[bot] in #215
• Add Bird Fancier's Lung by @caufieldjh in #214
• Add Neuromyelitis Optica Spectrum Disorder and neuroimmune project by @cmungall in #143
• classifications and comorbidity by @cmungall in #230
• Bump actions/setup-python from 5.6.0 to 6.2.0 by @dependabot[bot] in #228

Full Changelog: v0.1.5...v0.1.6

v0.1.5

What's Changed

• 🤖 Weekly Compliance Fixes: Triple-Negative Breast Cancer (2026-01-27) by @claude[bot] in #191
• 🤖 Weekly Compliance Fixes: MSI-High Colorectal Cancer (2026-01-27) by @claude[bot] in #192
• 🤖 Weekly Compliance Fixes: MSI-High Endometrial Cancer (2026-01-27) by @claude[bot] in #193
• 🤖 Weekly Compliance Fixes: ER-Positive Breast Cancer (2026-01-27) by @claude[bot] in #194
• 🤖 Weekly Compliance Fixes: Adult T-Cell Leukemia/Lymphoma (2026-01-27) by @claude[bot] in #195
• 📄 Regenerate pages and dashboard (2026-01-27) by @github-actions[bot] in #196
• Add FICUS syndrome by @caufieldjh in #186
• Bump actions/github-script from 6 to 8 by @dependabot[bot] in #4
• Bump pypa/gh-action-pypi-publish from 1.12.4 to 1.13.0 by @dependabot[bot] in #5
• 📄 Regenerate pages and dashboard (2026-01-28) by @github-actions[bot] in #201
• 🤖 Weekly Compliance Fixes (2026-01-28): Von Hippel-Lindau Disease by @claude[bot] in #203
• 🤖 Weekly Compliance Fixes (2026-01-28): Myasthenia Gravis by @claude[bot] in #204
• 🤖 Weekly Compliance Fixes (2026-01-28): Alzheimer's Disease by @claude[bot] in #205
• Add Sengers syndrome by @caufieldjh in #185
• 📄 Regenerate pages and dashboard (2026-01-28) by @github-actions[bot] in #207
• Add gene_term slot to Genetic class for HGNC ontology binding by @github-actions[bot] in #202
• Add Proteus syndrome by @caufieldjh in #199
• 📄 Regenerate pages and dashboard (2026-01-29) by @github-actions[bot] in #209
• Add Silent Sinus Syndrome disorder entry by @justaddcoffee in #206
• Fix pathophysiology bundling by decomposing into atomic mechanisms by @github-actions[bot] in #210
• 📄 Regenerate pages and dashboard (2026-01-30) by @github-actions[bot] in #212

New Contributors

• @justaddcoffee made their first contribution in #206

Full Changelog: v0.1.4...v0.1.5

v0.1.4

UI Changes

https://monarch-initiative.github.io/dismech/app/embeddings/index.html

Diseases can be explored in embedding space

Pathophsyiology embeddings:

Phenotype embeddings:

Treatment embeddings:

What's Changed

• Add evidence and fix ontology terms per PR#33 review by @Copilot in #128
• Add Acne Vulgaris disorder entry by @turbomam in #176
• 🤖 Weekly Compliance Fixes (2026-01-23): Osteoarthritis by @claude[bot] in #179
• 🤖 Weekly Compliance Fixes (2026-01-23): Sickle Cell Disease by @claude[bot] in #178
• 🤖 Weekly Compliance Fixes (2026-01-23): Camptodactyly by @claude[bot] in #177
• feat: add pars planitis disorder curation by @cmungall in #33
• 📄 Regenerate pages and dashboard (2026-01-25) by @github-actions[bot] in #180
• Curation updates, histopathology schema, and embedding browser assets by @cmungall in #183
• Add Peutz Jeghers polyp by @caufieldjh in #165
• Adding cached items by @cmungall in #187
• Expand schema to define evidence source types; update three pages with evidence source types by @caufieldjh in #173
• 📄 Regenerate pages and dashboard (2026-01-27) by @github-actions[bot] in #189

New Contributors

• @turbomam made their first contribution in #176

Full Changelog: v0.1.3...v0.1.4

v0.1.3

What's Changed

• Add weekly compliance GitHub Action by @cmungall in #65
• 📄 Regenerate pages and dashboard (2026-01-08) by @github-actions[bot] in #75
• Add Fabry Disease page; add Differential Diagnosis section by @caufieldjh in #76
• Add Maple Syrup Urine Disease disorder entry by @kevinschaper in #85
• Add Semicircular Canal Dehiscence Syndrome disorder entry by @kevinschaper in #84
• Fix TypeError when exporting disorders with null YAML fields by @Copilot in #103
• Add Cushing's Syndrome disorder entry by @kevinschaper in #95
• 📄 Regenerate pages and dashboard (2026-01-09) by @github-actions[bot] in #104
• 🤖 Weekly Compliance Fixes - Camptodactyly (2026-01-09) by @claude[bot] in #99
• 🤖 Weekly Compliance Fixes - Clostridioides difficile Infection (2026-01-09) by @claude[bot] in #96
• 📄 Regenerate pages and dashboard (2026-01-09) by @github-actions[bot] in #105
• Add Meniere's Disease disorder entry by @kevinschaper in #94
• Add Hepatitis C disorder entry by @kevinschaper in #87
• Enhance compliance update instructions in workflow by @dragon-ai-agent in #110
• 📄 Regenerate pages and dashboard (2026-01-10) by @github-actions[bot] in #109
• Add Alpha-1 Antitrypsin Deficiency disorder entry by @kevinschaper in #93
• Add page for Cronkhite-Canada syndrome by @caufieldjh in #100
• Add Retrograde Cricopharyngeus Dysfunction (R-CPD) by @kevinschaper in #107
• Add Hemochromatosis disorder entry by @kevinschaper in #92
• Add cyberian extra to deep-research-client dependency by @kevinschaper in #118
• Add Visual Snow Syndrome disorder entry by @kevinschaper in #117
• 🤖 Weekly Compliance Fixes (2026-01-13) - Travelers Diarrhea by @claude[bot] in #122
• Adding Scurvy purely as learning exercise by @oneilsh in #83
• 📄 Regenerate pages and dashboard (2026-01-13) by @github-actions[bot] in #125
• Add Sarcoidosis disorder entry by @kevinschaper in #90
• 📄 Regenerate pages and dashboard (2026-01-13) by @github-actions[bot] in #127
• Add Lyme Disease disorder entry by @kevinschaper in #88
• 🤖 Weekly Compliance Fixes: Myasthenia Gravis (2026-01-08) by @claude[bot] in #81
• Add Polycystic Kidney Disease disorder entry by @kevinschaper in #89
• Add Tetanus disorder entry by @kevinschaper in #91
• Add Long COVID disorder entry by @kevinschaper in #119
• Add NCBITaxon support for infectious agents by @caufieldjh in #135
• Add reference validator configuration and fix GEO dataset titles by @cmungall in #138
• Add explicit post-composition slots: located_in, laterality, therapeutic_agent by @cmungall in #140
• Add Whipple disease by @caufieldjh in #137
• Add Dieulafoy Lesion by @caufieldjh in #133
• Add Amyotrophic Lateral Sclerosis (ALS) to knowledge base by @kevinschaper in #86
• 📄 Regenerate pages and dashboard (2026-01-15) by @github-actions[bot] in #144
• Bump astral-sh/setup-uv from 5 to 7 by @dependabot[bot] in #3
• 🤖 Weekly Compliance Fixes: Clostridioides difficile Infection (2026-01-08) by @claude[bot] in #77
• 📄 Regenerate pages and dashboard (2026-01-16) by @github-actions[bot] in #149
• Add Polycystic echinococcosis by @caufieldjh in #147
• Improve compliance for Osteoporosis (2026-01-16) by @claude[bot] in #153
• Improve compliance for Atrial Fibrillation (2026-01-16) by @claude[bot] in #152
• Add Auto-Brewery Syndrome disorder entry by @kevinschaper in #157
• 🤖 Weekly Compliance Fixes: Travelers Diarrhea (2026-01-08) by @claude[bot] in #78
• 📄 Regenerate pages and dashboard (2026-01-16) by @github-actions[bot] in #151
• Add Shigellosis by @caufieldjh in #162
• Add Collagenous Sprue by @caufieldjh in #161
• Add Lane Hamilton Syndrome page by @caufieldjh in #160
• 📄 Regenerate pages and dashboard (2026-01-20) by @github-actions[bot] in #166
• Add Melkersson Rosenthal syndrome by @caufieldjh in #167
• 📄 Regenerate pages and dashboard (2026-01-21) by @github-actions[bot] in #169
• Add clinical trials section; add trial data to several disorder pages by @caufieldjh in #158
• 📄 Regenerate pages and dashboard (2026-01-21) by @github-actions[bot] in #170
• Add Ludwig's Angina and update Bacterial Meningitis by @caufieldjh in #171
• 📄 Regenerate pages and dashboard (2026-01-22) by @github-actions[bot] in #172
• Add Pouchitis disorder to knowledge base by @realmarcin in #168
• 📄 Regenerate pages and dashboard (2026-01-22) by @github-actions[bot] in #174

New Contributors

• @github-actions[bot] made their first contribution in #75
• @claude[bot] made their first contribution in #99
• @dragon-ai-agent made their first contribution in #110
• @oneilsh made their first contribution in #83 Scurvy
• @realmarcin made their first contribution in #168 Pouchitis

Full Changelog: v0.1.2...v0.1.3

v0.1.2

What's Changed

• Fix HPO term for Large for gestational age in CHIME syndrome by @Copilot in #39
• Add comprehensive Dementia with Lewy Bodies curation by @diatomsRcool in #41
• Improve Chronic Pancreatitis curation to 85% compliance by @amc-corey-cox in #28
• Add evidence to Phenylketonuria, Wilson Disease, and Cystic Fibrosis by @amc-corey-cox in #50
• Enhance Parkinson's Disease with comprehensive pathophysiology mechanisms by @cmungall in #51
• Bump actions/checkout from 4 to 6 by @dependabot[bot] in #1
• Add evidence to Wilson's Disease, Narcolepsy, Fanconi Anemia + fix tests by @cmungall in #54
• Improve ontology grounding for AIDS by @kevinschaper in #55
• Add page for TARP syndrome by @caufieldjh in #56
• Add Hemophilia A and Tay-Sachs Disease curations by @amc-corey-cox in #58
• Add grange syndrome by @caufieldjh in #59
• Add CHIME syndrome curation by @caufieldjh in #37
• Add Holt-Oram Syndrome page by @caufieldjh in #61
• Add page for Meckel Diverticulum by @caufieldjh in #64
• Add 5 genetic/rare disease disorders with evidence by @amc-corey-cox in #60
• Add page for Wolf-Hirschhorn Syndrome by @caufieldjh in #62
• Improve CI validation with path-based filtering by @cmungall in #67
• Bump actions/setup-node from 3 to 6 by @dependabot[bot] in #2
• Add generate-pages GitHub Action by @cmungall in #66
• Fix Fibromyalgia YAML schema validation errors by @cmungall in #74

New Contributors

• @dependabot[bot] made their first contribution in #1

Full Changelog: v0.1.1...v0.1.2