Bug fix: title symbol splitting

[joeflack4]

Partially addresses:

• Sub-task (3) in A few synonym representation issues based on the review of the synonym sync "added" PR #191

Summary of fix

Addressing issue where should have been including a space when splitting, e.g. '; ' and ';; '.

Context

Basically, OMIM has title/symbol pairs in mimTitles.txt. The pairs are delimited by ;; . And in each pair, the first entry is a title, with a ; after it if there are any associated symbols, with further ; delimiting each of those symbols.

[joeflack4]

@twhetzel Here's the diff after running this:

94116d94115
< AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/172200> ". PGD, ERYTHROCYTE")
94118c94117
< AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/172200> "6-phosphogluconate dehydrogenase, erythrocyte")
---
> AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/172200> "6-phosphogluconate dehydrogenase, erythrocyte;. pgd, erythrocyte")
311200,311202c311199,311200
< AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/609029> "22) SYNDROME")
< AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/609029> "emanuel syndrome")
< AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/609029> "supernumerary der(22)t(11")
---
> AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/609029> "emanuel syndrome")
> AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/609029> "supernumerary der(22)t(11;22) syndrome")
379173c379171
< # Class: <https://omim.org/entry/613700> (supernumerary der(22)t(8)
---
> # Class: <https://omim.org/entry/613700> (supernumerary der(22)t(8;22) syndrome)
379175,379177c379173,379174
< AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/613700> "22) SYNDROME")
< AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/613700> "supernumerary der(22)t(8")
< AnnotationAssertion(rdfs:label <https://omim.org/entry/613700> "supernumerary der(22)t(8")
---
> AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/613700> "supernumerary der(22)t(8;22) syndrome")
> AnnotationAssertion(rdfs:label <https://omim.org/entry/613700> "supernumerary der(22)t(8;22) syndrome")

Looks good, except I think this new one is might be mistake: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <https://omim.org/entry/172200> "6-phosphogluconate dehydrogenase, erythrocyte;. pgd, erythrocyte")

I think maybe that ;. is supposed to be ;;, and that this should be 2 different titles.

I emailed OMIM about this, replying to an existing email chain that had a similar issue. Email subject: 301083 alt title;symbol syntax mistake