Version 1.1.0
Many changes to the language and the internal code warrant a new release:
- Fix CIGAR interpretation (#109) occurring when
Iis present - Call
bwa memso that it behaves in a deterministic way (independently of the number of threads used) - Add
include_fragmentsoption toorf_find() - Add early check for column headers in
count() - Add
senseargument tocount() - Add line numbers to FastQ parsing errors
- Fix
__extra_argsargument inmap() - Add
discard_singlesfunction - Add
interleavedoption to fastq() load_mocat_samplenow fails ifpair.2exists butpair.1doesn't- Reintroduce zstd compression (after fixes upstream)