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Oregon Health and Science University Computational Biology

19 followers
Portland, OR
http://www.ohsu.edu/compbio

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funnel funnel Public

Funnel is a toolkit for distributed task execution via a simple, standard API.

Go 134 41
tesseract tesseract Public

Python lib for remote code execution via the GA4GH TES API

Python 7
g2p-aggregator g2p-aggregator Public

Associations of genomic features, drugs and diseases

HTML 48 11

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Showing 10 of 212 repositories

funnel Public
Funnel is a toolkit for distributed task execution via a simple, standard API.

ohsu-comp-bio/funnel’s past year of commit activity

Go 134 MIT 41 130 (1 issue needs help) 9 Updated Feb 7, 2026
helm-charts Public
Helm Charts for deploying various projects in Kubernetes!

ohsu-comp-bio/helm-charts’s past year of commit activity

Go Template 1 1 0 0 Updated Feb 7, 2026
embedding-kit Public

ohsu-comp-bio/embedding-kit’s past year of commit activity

Python 1 3 0 1 Updated Feb 6, 2026
dpclust Public Forked from Wedge-lab/dpclust
Dirichlet Process based methods for subclonal reconstruction of tumours

ohsu-comp-bio/dpclust’s past year of commit activity

R 0 AGPL-3.0 19 0 1 Updated Feb 3, 2026
battenberg Public Forked from Wedge-lab/battenberg
Battenberg R package for subclonal copynumber estimation

ohsu-comp-bio/battenberg’s past year of commit activity

R 0 AGPL-3.0 60 0 1 Updated Jan 30, 2026
UniVI Public

ohsu-comp-bio/UniVI’s past year of commit activity

Jupyter Notebook 1 MIT 0 0 0 Updated Jan 23, 2026
meeting-summarizer Public
Summarizer for meeting transcripts

ohsu-comp-bio/meeting-summarizer’s past year of commit activity

0 0 0 0 Updated Oct 15, 2025
indexd Public Forked from uc-cdis/indexd
Prototype index service server.

ohsu-comp-bio/indexd’s past year of commit activity

Python 0 Apache-2.0 21 1 0 Updated Oct 14, 2025
regulon-enrichment Public Forked from JEstabrook/regulon-enrichment

ohsu-comp-bio/regulon-enrichment’s past year of commit activity

Jupyter Notebook 7 GPL-3.0 2 0 0 Updated Sep 2, 2025
.github Public template

ohsu-comp-bio/.github’s past year of commit activity

0 0 0 0 Updated Aug 19, 2025

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