Big Data Analytics group

All

43 repositories

siibra-python
Public
Software interfaces for interacting with brain atlases - Python client
neuroscience brain atlas humanbrainproject bigbrain bigbrainproject
Python
•
Apache License 2.0
•12•56•46•2•Updated Feb 19, 2026Feb 19, 2026
siibra-api
Public
Python
•
Apache License 2.0
•3•4•5•0•Updated Feb 18, 2026Feb 18, 2026
siibra-configurations
Public
Python
•2•1•26•4•Updated Feb 18, 2026Feb 18, 2026
siibra-explorer
Public
TypeScript
•
Apache License 2.0
•5•26•56•7•Updated Feb 11, 2026Feb 11, 2026
vlsi
Public
Variable Length Spatial Index
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 9, 2026Feb 9, 2026
pytiff
Public
Cython
•
Other
•13•11•7•0•Updated Jan 22, 2026Jan 22, 2026
siibra-jugex
Public
Differential analysis of gene expressions in human brain regions
Python
•
Apache License 2.0
•1•0•3•2•Updated Jan 14, 2026Jan 14, 2026
siibra-infrastructure-profiling
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 22, 2025Dec 22, 2025
siibra-infrastructure-incidents
Public
Python
•
MIT License
•0•0•0•0•Updated Dec 5, 2025Dec 5, 2025
siibra-tutorials
Public
Tutorials for the siibra toolsuite - software interface for brain atlases.
Jupyter Notebook
•
Apache License 2.0
•1•15•1•0•Updated Nov 28, 2025Nov 28, 2025
voluba
Public
Browser based tool for interactive alignment of high-resolution volumes of interest to 3D reference brain models
Vue
•
Apache License 2.0
•0•4•31•3•Updated Oct 7, 2025Oct 7, 2025
siibra
Public
0•0•0•0•Updated Sep 9, 2025Sep 9, 2025
iav-dep-test
Public
Python
•0•1•0•0•Updated Sep 8, 2025Sep 8, 2025
big5-napari
Public
Python
•1•0•0•0•Updated Aug 20, 2025Aug 20, 2025
pli2cells
Public
Virtual Cresyl violet staining from 3D-PLI images.
Python
•
Apache License 2.0
•0•0•0•0•Updated May 20, 2025May 20, 2025
celldetection
Public
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
deep-learning pytorch object-detection unet semantic-segmentation cell-segmentation cpn instance-segmentation mask-rcnn cell-detection
Python
•
Apache License 2.0
•22•147•15•0•Updated Apr 22, 2025Apr 22, 2025
HBP-connectivity-component
Public
TypeScript
•
MIT License
•0•1•3•1•Updated Mar 31, 2025Mar 31, 2025
siibra-compose
Public
Python
•
MIT License
•0•1•0•0•Updated Mar 21, 2025Mar 21, 2025
siibralab
Public
Matlab interface to the siibra toolsuite
MATLAB
•
Apache License 2.0
•2•5•8•3•Updated Jan 23, 2025Jan 23, 2025
cl-3d
Public
Contrastive learning using 3D context of stacked brain sections.
Python
•
Apache License 2.0
•0•2•0•0•Updated Jan 17, 2025Jan 17, 2025
siibra-schema
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
celldetection-napari
Public
Python
•
Apache License 2.0
•1•5•1•0•Updated Jul 10, 2024Jul 10, 2024
HAICon2024-satellite-events
Public
0•2•11•0•Updated Jan 18, 2024Jan 18, 2024
siibra-cli
Public
Command line interface for siibra
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 8, 2024Jan 8, 2024
hbp-fluentd-logger
Public archive
JavaScript
•0•0•0•0•Updated Dec 1, 2023Dec 1, 2023
voluba-mriwarp
Public
Integrate whole brain T1-weighted MRI scans into the anatomical context of the Julich Brain Atlas. Find the developer documentation at https://voluba-mriwarp.re…
Python
•
Apache License 2.0
•1•2•13•1•Updated Nov 14, 2023Nov 14, 2023
neurips22-cell-seg
Public
Python
•
Apache License 2.0
•1•7•1•0•Updated Aug 1, 2023Aug 1, 2023
HIBALL-Hackathon-2023
Public
0•1•8•0•Updated May 26, 2023May 26, 2023
ebrains_fluentd
Public
Dockerfile
•
MIT License
•0•0•0•0•Updated May 3, 2023May 3, 2023
webjugex-dependency-tests
Public archive
JavaScript
•0•0•0•5•Updated Mar 4, 2023Mar 4, 2023