MASI Lab @ Vanderbilt

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183 repositories

insertion_network
Public
MIT License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
FLAIR_Tract
Public
FLAIR Tractography without subject-specific anatomical context.
Python
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
PreQual
Public
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
quality mri assurance preprocessing diffusion
Python
•
Other
•10•53•1•2•Updated Feb 11, 2026Feb 11, 2026
surface_distance
Public
Code for calculating mean absolute surface distance.
Python
•
MIT License
•0•0•0•0•Updated Feb 11, 2026Feb 11, 2026
Informatics_ADSP
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Feb 11, 2026Feb 11, 2026
spherical_deep_fixel
Public
DeepFixel: Deep learning-based identification of crossing fiber bundle elements
Python
•
MIT License
•2•0•0•0•Updated Feb 11, 2026Feb 11, 2026
SPIE2026_DermIDS
Public
Shell
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
ADSP_AutoQA
Public
Automated QA for ADSP processing
Python
•
MIT License
•2•5•2•1•Updated Jan 21, 2026Jan 21, 2026
DisCo_ext
Public
Jupyter Notebook
•0•0•0•0•Updated Dec 18, 2025Dec 18, 2025
BRAID
Public
BRain Age Identification from Diffusion MRI (BRAID)
computer-vision deep-learning mri
Python
•
Other
•2•4•0•0•Updated Dec 12, 2025Dec 12, 2025
Weather_Fetcher
Public
Python
•0•0•0•0•Updated Nov 12, 2025Nov 12, 2025
nf-neuro-fitbir
Public
Roff
•8•0•0•0•Updated Oct 31, 2025Oct 31, 2025
mri2avatar
Public
Can we turn whole-head MRIs to photorealistic avatars?
Python
•
MIT License
•0•3•0•0•Updated Oct 10, 2025Oct 10, 2025
open_dive
Public
Open Diffusion Visualization for Everyone - BrainHack Vandy 2025
Python
•
MIT License
•8•9•5•1•Updated Aug 20, 2025Aug 20, 2025
cornn_tractography
Public
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
deep-learning diffusion-mri tractography t1-weighted-mri convolutional-recurrent-neural-network
Python
•2•21•0•0•Updated Aug 6, 2025Aug 6, 2025
SynBOLD-DisCo
Public
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
deep-learning distortion-correction fmri bold
Python
•
MIT License
•6•32•1•0•Updated Jul 31, 2025Jul 31, 2025
Synb0-DISCO
Public
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
deep-learning distortion-correction diffusion-mri
Python
•
MIT License
•34•84•2•1•Updated Jul 31, 2025Jul 31, 2025
deep_fixel
Public
DeepFixel: Deep learning-based identification of crossing fiber bundle elements
Python
•
MIT License
•2•0•0•0•Updated Jul 29, 2025Jul 29, 2025
slantticv_qc
Public
Statistical test methods for SLANT-TICV
mri bids-format mri-segmentation t1-weighted-mri
Python
•1•0•0•0•Updated Jul 26, 2025Jul 26, 2025
brain_ventricle_icu
Public
Jupyter Notebook
•0•0•0•0•Updated Jul 10, 2025Jul 10, 2025
beyond_fa_3r
Public
Shell
•
MIT License
•1•0•0•0•Updated Jul 1, 2025Jul 1, 2025
DeepN4
Public
Jupyter Notebook
•1•4•1•0•Updated Jun 28, 2025Jun 28, 2025
tensor_metric_infonce_inference
Public
Python
•1•0•0•0•Updated Jun 24, 2025Jun 24, 2025
beyond_fa_pca
Public
Jupyter Notebook
•1•0•0•0•Updated Jun 23, 2025Jun 23, 2025
beyond_fa_md
Public
beyond fa challenge using md metric
Python
•
MIT License
•1•0•0•0•Updated Jun 23, 2025Jun 23, 2025
GeneralQATool
Public
non-bids QA tool
HTML
•
MIT License
•0•0•0•0•Updated Jun 21, 2025Jun 21, 2025
beyondfa_ad
Public
Shell
•
MIT License
•1•0•0•0•Updated Jun 16, 2025Jun 16, 2025
beyondfa_mix_clean
Public
Shell
•
MIT License
•1•0•0•0•Updated Jun 16, 2025Jun 16, 2025
beyondfa_microstruct_ad
Public
BFA Grand Challenge (axial diffusivity)
Shell
•
MIT License
•0•0•0•0•Updated Jun 16, 2025Jun 16, 2025
RotNet-FA-Baseline
Public
Baseline algorithm for Beyond FA Challenge
Python
•0•0•0•0•Updated Jun 12, 2025Jun 12, 2025