Repositories list

• flygym-v2

  Public
  Simulating embodied sensorimotor control with NeuroMechFly v2

  Python

  •

  Apache License 2.0

  •11•0•0•1•Updated Feb 23, 2026Feb 23, 2026

• plot-neurons

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• ballpushing_utils

  Public
  This is a package containing modules to load, process and analyse ball pushing experiment.

  HTML

  •

  MIT License

  •0•0•0•14•Updated Feb 17, 2026Feb 17, 2026

• utils_behavior

  Public
  Utility functions to manipulate and analyze behavior videos and associated data (tracking...) acquired in various setups and settings.

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

• cobar-2026

  Public
  BIOENG 456: Controlling Behavior in Animals and Robots

  Jupyter Notebook

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• fictrac

  Public
  FicTrac: A webcam-based method for tracking spherical motion and generating fictive animal paths.

  C++

  •

  Other

  •37•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• flygym

  Public
  Simulating embodied sensorimotor control with NeuroMechFly v2

  biomechanicsphysics-simulationmujoco+ 3published-articleneuroaistable-infrastructure

  Python

  •

  Apache License 2.0

  •11•52•9•2•Updated Jan 29, 2026Jan 29, 2026

• sequential-inverse-kinematics

  Public
  Sequential inverse kinematics pipeline.

  inverse-kinematicsdrosophila-melanogaster

  Python

  •

  Apache License 2.0

  •0•11•2•0•Updated Jan 21, 2026Jan 21, 2026

• Tracking_Analysis

  Public
  This repository comprises a set of tools used to perform tracking on behaviour arena data, analysis and plotting.

  active-dev

  Jupyter Notebook

  •

  MIT License

  •0•1•1•0•Updated Jan 15, 2026Jan 15, 2026

• DeMotion5D

  Public
  Remove sample movement from 5D microscopy data (xyz+time+color)

  Python

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• vnc_networks

  Public
  Code to analyse different connectomes

  connectome

  Jupyter Notebook

  •

  MIT License

  •0•0•8•0•Updated Dec 15, 2025Dec 15, 2025

• antennal-grooming

  Public
  Repository hosting the analysis code for Ozdil et al 2024.

  Jupyter Notebook

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• scitas-util

  Public
  Utilities for running jobs on SCITAS

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 22, 2025Nov 22, 2025

• DeepFly3D

  Public
  Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

  deep-learningmotion-capturepose-estimation+ 2drosophila-melanogasterpublished-article

  Jupyter Notebook

  •

  GNU Lesser General Public License v3.0

  •17•95•3•1•Updated Nov 20, 2025Nov 20, 2025

• ballpushing_simulation

  Public
  Set of tools for individual based model of ball pushing behavior

  MIT License

  •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• _media

  Public
  This repository is for larger media files (eg. GIFs/videos on the README).

  Shell

  •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

• multimaze_recorder

  Public
  Tools to operate Matthias' high-throughput recording setup

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

• neuromechfly-live

  Public
  A game to control neuromechfly through a short track with different control strategies

  outreachflygym

  Python

  •

  Apache License 2.0

  •0•0•2•0•Updated Sep 19, 2025Sep 19, 2025

• sleap_tools

  Public
  A repository to regroup useful code to manipulate sleap objects and h5 exports, as well as help and method to setup tracking routines.

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Aug 26, 2025Aug 26, 2025

• PyBundleAdjustment

  Public
  Triangulate 2D poses from multiple cameras to get camera locations and 3D poses

  published-article

  Jupyter Notebook

  •2•1•0•1•Updated Jul 30, 2025Jul 30, 2025

• .github

  Public
  0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• df3dPostProcessing

  Public
  Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles

  behaviorstable-infrastructure

  Python

  •

  MIT License

  •0•2•0•0•Updated Jul 17, 2025Jul 17, 2025

• kinematics3d

  Public
  Pipeline for calibration, triangulation, and data processing using DeepLabCut and Anipose.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• cobar-miniproject-2025

  Public archive
  Miniproject for BIOENG-456: Controlling behavior in animals and robots

  teaching

  Python

  •5•2•0•1•Updated May 27, 2025May 27, 2025

• dn_networks

  Public
  Repository holding the code for Braun et al. 2023

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• DeepFly2D

  Public
  Pretrained 2D pose estimation network for a tethered fly on a ball from different camera views

  published-article

  Jupyter Notebook

  •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• Sociability_Learning

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2025Jan 4, 2025

• farms_mujoco

  Public
  FARMS package for interfacing to the MuJoCo simulator

  Python

  •7•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• farms_core

  Public
  FARMS core

  Python

  •

  Apache License 2.0

  •7•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• farms_sim

  Public
  FARMS package for running simulations with physics engines

  Python

  •5•0•0•0•Updated Nov 15, 2024Nov 15, 2024