Repositories list

• swedish-pathogens-portal

  Public
  WIP repository for Swedish Pathogens Portal 2.0

  HTML

  •

  MIT License

  •0•1•1•3•Updated Feb 18, 2026Feb 18, 2026

• serve

  Public
  SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life…

  Python

  •

  Apache License 2.0

  •3•14•0•8•Updated Feb 18, 2026Feb 18, 2026

• RDM-guidelines

  Public
  This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

  HTML

  •

  MIT License

  •5•5•19•1•Updated Feb 18, 2026Feb 18, 2026

• divbase

  Public
  (Work in Progress) DivBase - A service to manage, query and version VCF files and associated sample metadata

  Python

  •

  MIT License

  •0•1•0•2•Updated Feb 18, 2026Feb 18, 2026

• dds_cli

  Public
  The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

  pythoncommand-lineclick

  Python

  •

  MIT License

  •12•12•0•3•Updated Feb 18, 2026Feb 18, 2026

• dds_web

  Public
  A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

  pythonflask

  Python

  •

  Other

  •8•9•0•4•Updated Feb 18, 2026Feb 18, 2026

• serve-charts

  Public
  SciLifeLab Serve charts repository

  HTML

  •

  Other

  •1•1•0•3•Updated Feb 18, 2026Feb 18, 2026

• pathogens-portal

  Public
  Swedish pathogens portal

  bootstrapmarkdownhugo+ 1covid-19

  HTML

  •

  MIT License

  •28•13•0•1•Updated Feb 17, 2026Feb 17, 2026

• open-science-checklists

  Public
  Checklists produced by the Open Science Team at SciLifeLab Sweden for guidance on compliance with FAIR principles.

  Other

  •1•0•2•2•Updated Feb 12, 2026Feb 12, 2026

• Annual_report_Bibliometry

  Public
  This is where the bibliometrics scripts for the annual report are held. Each year has a dedicated folder of scripts, but the scripts are standardised as much a…

  Python

  •

  MIT License

  •0•2•0•0•Updated Feb 12, 2026Feb 12, 2026

• data.scilifelab.se

  Public
  SciLifeLab Data Platform

  HTML

  •

  MIT License

  •5•2•0•0•Updated Feb 12, 2026Feb 12, 2026

• scilifelab-metadata-templates

  Public
  This repository stores metadata templates in use at SciLifeLab, organized according to data type.

  Python

  •

  MIT License

  •2•1•3•3•Updated Feb 11, 2026Feb 11, 2026

• serve-tutorials

  Public
  Tutorials for running applications on Scilifelab Serve.

  Jupyter Notebook

  •

  MIT License

  •1•6•0•0•Updated Feb 10, 2026Feb 10, 2026

• genome-portal

  Public
  This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studi…

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 9, 2026Feb 9, 2026

• gradio-flower-classification

  Public
  Web app that allows users to input an image of a flower and get a prediction on what type of flower it is from a machine learning model.

  Python

  •

  MIT License

  •1•1•0•0•Updated Feb 9, 2026Feb 9, 2026

• DIGIfor1Health_web

  Public
  Liquid

  •

  MIT License

  •1•0•2•0•Updated Jan 29, 2026Jan 29, 2026

• serve-load-testing

  Public
  Load testing for SciLifeLab Serve using the Python Locust library.

  Python

  •

  MIT License

  •0•1•0•1•Updated Jan 28, 2026Jan 28, 2026

• serve-inveniordm

  Public
  Custom InvenioRDM image for SciLifeLab Serve

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

• serve-event-listener

  Public
  This repository contains the code for the serve event listener functionality

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jan 26, 2026Jan 26, 2026

• serve-invenio

  Public
  Helm chart for deploying InvenioRDM, a turnkey research data management platform, customized for SciLifeLab Serve.

  Go Template

  •

  MIT License

  •0•1•0•0•Updated Jan 20, 2026Jan 20, 2026

• openwebui-locust

  Public
  Load testing Open WebUI deployments using Locust

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

• precision-medicine-portal-frontend

  Public
  React project for the frontend of the Precision Medicine Portal by DC Data Science Node

  TypeScript

  •

  Other

  •0•2•0•0•Updated Jan 16, 2026Jan 16, 2026

• ids-project-tracking-one-pager

  Public
  One pager for IDS project tracking

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• omero-server-extended

  Public
  Custom Docker image for the OMERO server, bundling needed extensions such as omero-metadata and other automation scripts. The goal is to provide a self-containe…

  Python

  •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

• Anubis

  Public
  Proposal submission and review handling system.

  Python

  •

  MIT License

  •3•2•3•8•Updated Nov 13, 2025Nov 13, 2025

• omero-prometheus-tools

  Public
  Utilities for monitoring OMERO with Prometheus

  Python

  •11•0•0•0•Updated Nov 11, 2025Nov 11, 2025

• omero-workshops

  Public
  Workshop material related to SciLifeLab OMERO

  Jupyter Notebook

  •

  Other

  •0•1•0•0•Updated Nov 10, 2025Nov 10, 2025

• OrderPortal

  Public
  A portal for orders (requests, project applications, etc) to a facility from its users.

  Python

  •

  MIT License

  •13•7•6•7•Updated Nov 10, 2025Nov 10, 2025

• dsw-appendix

  Public
  A static site which provides extra documentation for users of the main DSW system

  CSS

  •

  Other

  •1•1•0•0•Updated Oct 31, 2025Oct 31, 2025

• data-repository-scripts-public

  Public
  Public scripts for the SciLifeLab Data Repository

  MIT License

  •0•0•0•0•Updated Oct 3, 2025Oct 3, 2025