Repositories list

• .github

  Public
  scrna-seqsegmentationspatial-analysis+ 5single-cell-analysisosteosarcomafish-classificationneuroblastomasnatac-seq

  0•0•0•0•Updated Sep 27, 2025Sep 27, 2025

• YAP-TAZ_study

  Public
  scRNA-seq analysis code for the publication Strohmenger et al., 2025

  scrna-seqimage-analysis

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jul 10, 2025Jul 10, 2025

• NK-NB_study

  Public
  Code for the publication Rados, Wernig-Zorc et al., 2025

  scrna-seq

  R

  •

  MIT License

  •0•1•0•0•Updated Jul 10, 2025Jul 10, 2025

• SpotSegmentation

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• MapMetSC

  Public
  MAPping METastases in Neuroblastoma - spatially and temporally

  quality-controlcorrelation-analysisdifferential-abundance-analysis+ 1cell-clustering

  R

  •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

• MapMetIP

  Public
  Image processing pipeline for multi-modal images

  feature-extractionimage-registrationcellpose-segmentation+ 1semi-supervised-background-correction

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• neuroblastoma

  Public
  Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• DeepFLEX

  Public
  DeepFLEX: Deep learning-based single-cell analysis pipeline for FLuorescence multiplEX imaging

  Python

  •

  MIT License

  •2•0•0•0•Updated Jan 26, 2022Jan 26, 2022