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    240 repositories

    • aaura-bench-preprocess

      Public
      Preprocessing of datasets for use in the AAuRA Benchmarking tool.
      Jupyter Notebook
      •0•0•0•1•Updated Feb 17, 2026Feb 17, 2026

    • ORCESTRA

      Public
      ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
      JavaScript
      •
      Apache License 2.0
      •2•5•29•8•Updated Feb 17, 2026Feb 17, 2026

    • jarvais-breast

      Public
      Applying JarvAIs to breast cancer data for radiogenomic analysis.
      Jupyter Notebook
      •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • AnnotationGx

      Public
      An R package to query various bio/chem-informatics databases APIs to construct annotation files.
      R
      •
      MIT License
      •1•2•8•1•Updated Feb 17, 2026Feb 17, 2026

    • survcomp

      Public
      R package for performance assessment and comparison for survival analysis
      visualizationregressiongene-expressionsurvivaldifferential-expression
      C++
      •7•10•6•1•Updated Feb 17, 2026Feb 17, 2026

    • orcestra-new-api

      Public
      Python
      •1•0•11•0•Updated Feb 17, 2026Feb 17, 2026

    • recist-vs-reality

      Public
      Development of the AI-Augmented Response Assessment
      Jupyter Notebook
      •0•0•0•1•Updated Feb 15, 2026Feb 15, 2026

    • annotationdb-api

      Public
      API for interfacing with AnnotationDB
      JavaScript
      •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • Science-portal

      Public
      TypeScript
      •0•0•3•0•Updated Feb 12, 2026Feb 12, 2026

    • PMATCH-web

      Public
      JavaScript
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • bhklab-nninteractive

      Public
      bhklab-nnInteractive is a project which tests the nnInteractive medical image segmentation model using RECIST and RERECIST input prompts and evaluates its perfo…
      Jupyter Notebook
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • spatial-analysis-framework-hnscc

      Public
      A Spatial Analysis Framework for Head and Neck Squamous Cell Carcinoma
      R
      •0•0•13•0•Updated Feb 11, 2026Feb 11, 2026

    • PharmacoGx

      Public
      R package to analyze large-scale pharmacogenomic datasets.
      datasetspharmacogxpharmacogenomic
      R
      •
      GNU General Public License v3.0
      •26•71•74•3•Updated Feb 9, 2026Feb 9, 2026

    • annotationdb-seeding

      Public
      Repository for creating and populating MySQL tables for AnnotationDB using SQLAlchemy
      R
      •0•0•2•0•Updated Feb 6, 2026Feb 6, 2026

    • dnf2

      Public
      DNFv2 is the sequel to DNF using the tools from InteGrAO
      Jupyter Notebook
      •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • MedSAM2-RECIST

      Public
      Docker-based MedSAM2 inference pipeline for MICCAI FLARE25 Task1-PancancerRECIST-to-3D
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • bhklab-BiomedParse

      Public
      BiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities
      Python
      •
      Apache License 2.0
      •97•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • med-imagetools

      Public
      Transparent and reproducible medical image processing pipelines in Python.
      pythonmachine-learningdeep-learningdicomtorchpytorchmedicalnrrdnifti
      Python
      •
      MIT License
      •10•56•29•4•Updated Jan 29, 2026Jan 29, 2026

    • lab-website-data-refresh

      Public
      Repository containing scripts that merge data from external sources into our databases
      Python
      •0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • bhklab-website

      Public
      BHK Lab website
      JavaScript
      •0•0•6•0•Updated Jan 27, 2026Jan 27, 2026

    • PredictIO_Nextflow

      Public
      Nextflow pipeline for pan-cancer immunotherapy biomarker discovery using transcriptomic data
      Nextflow
      •0•0•0•0•Updated Jan 23, 2026Jan 23, 2026

    • science-portal-mailing

      Public
      Python
      •1•0•2•1•Updated Jan 22, 2026Jan 22, 2026

    • conformal-ffs

      Public
      Feature selection to find an optimal subset of features
      Jupyter Notebook
      •0•0•0•1•Updated Jan 21, 2026Jan 21, 2026

    • aircheck-sgc-taget2035

      Public
      Aircheck is a platform for high quality and structured data to enable the prediction of small molecules interactions with proteins using AI/ML.
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • handbook

      Public
      Lab Handbook For BHKLab
      0•4•42•9•Updated Jan 6, 2026Jan 6, 2026

    • hdd-data-pipeline

      Public
      Pipeline to create the Harmonized Drug Dataset (HDD)
      HTML
      •0•0•1•1•Updated Dec 24, 2025Dec 24, 2025

    • circRNA-detection

      Public
      R
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • damply

      Public
      Data Management Plan made simple
      Python
      •0•0•3•1•Updated Dec 17, 2025Dec 17, 2025

    • medsam2-inference

      Public
      Python
      •0•0•2•1•Updated Dec 12, 2025Dec 12, 2025

    • deep-drug-network-fusion

      Public
      DNF2
      JavaScript
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025