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    184 repositories

    • bioshmods

      Public
      Shiny modules for bioinformatics
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 21, 2026Feb 21, 2026

    • svirlpool

      Public
      Svirlpool: structural variant detection from long read sequencing by local assembly
      Python
      •
      MIT License
      •0•8•5•2•Updated Feb 20, 2026Feb 20, 2026

    • kiosc-server

      Public
      dockerdjango
      Python
      •
      MIT License
      •1•2•35•0•Updated Feb 20, 2026Feb 20, 2026

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •4•19•324•1•Updated Feb 20, 2026Feb 20, 2026

    • seaPiper

      Public
      Workflow output explorer for sea-snap
      R
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Feb 20, 2026Feb 20, 2026

    • sodar-core

      Public
      SODAR Core: A Django-based framework for building scientific data management web apps
      Python
      •
      MIT License
      •1•13•205•1•Updated Feb 19, 2026Feb 19, 2026

    • kiosc-docker-compose

      Public
      Docker compose deployment of kiosc-server
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • snappy-pipeline

      Public
      SNAPPY Nucleic Acid Processing in Python
      Python
      •
      MIT License
      •6•10•119•19•Updated Feb 18, 2026Feb 18, 2026

    • cubi-tk

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •5•5•35•4•Updated Feb 17, 2026Feb 17, 2026

    • dotty

      Public
      cdot-based transcript projections
      Python
      •
      MIT License
      •0•0•2•4•Updated Feb 16, 2026Feb 16, 2026

    • reev

      Public
      REEV: Explanation and Evaluation of Variants
      TypeScript
      •
      MIT License
      •5•11•40•12•Updated Feb 16, 2026Feb 16, 2026

    • bih-cluster

      Public
      BIH Cluster Wiki
      Awk
      •
      Other
      •35•18•7•1•Updated Feb 10, 2026Feb 10, 2026

    • sodar-django-site

      Public
      Django site template for SODAR Core based projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 30, 2026Jan 30, 2026

    • StemCNV-check

      Public
      R
      •
      MIT License
      •0•2•9•0•Updated Jan 29, 2026Jan 29, 2026

    • Rcrashcourse

      Public
      Bioinformatic R Crash Course
      HTML
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • irods-docker

      Public
      iRODS Docker image for use with SODAR
      Jinja
      •
      MIT License
      •2•2•17•0•Updated Jan 21, 2026Jan 21, 2026

    • RCrashcourse-book

      Public
      A Five Day Crash Course in R
      TeX
      •0•0•0•0•Updated Jan 18, 2026Jan 18, 2026

    • kolla-ansible

      Public
      Ansible deployment of the Kolla containers. Mirror of code maintained at opendev.org.
      Jinja
      •
      Apache License 2.0
      •688•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • kayobe

      Public
      Deployment of containerised OpenStack to bare metal using kolla and bifrost. Mirror of code maintained at opendev.org.
      Python
      •
      Apache License 2.0
      •37•0•0•0•Updated Jan 15, 2026Jan 15, 2026

    • reev-frontend-lib

      Public
      Re-useable components from REEV
      TypeScript
      •1•0•1•12•Updated Jan 13, 2026Jan 13, 2026

    • sodar-core-docker-compose

      Public
      Docker Compose network for SODAR Core development
      Shell
      •
      MIT License
      •0•0•1•0•Updated Jan 12, 2026Jan 12, 2026

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •2•3•21•1•Updated Nov 26, 2025Nov 26, 2025

    • LimsaR

      Public
      R client for SODAR
      R
      •
      Other
      •0•1•0•0•Updated Nov 21, 2025Nov 21, 2025

    • cubi-isa-templates

      Public
      CUBI ISA-Tab templates
      Python
      •
      MIT License
      •4•2•5•6•Updated Nov 14, 2025Nov 14, 2025

    • seasnap-pipeline

      Public
      SeA-SnaP: (Se)q (A)nalysis (Sna)kemake (P)ipeline
      Python
      •2•1•24•3•Updated Nov 13, 2025Nov 13, 2025

    • swibrid_paper

      Public
      Code and scripts for SWIBRID publication
      Jupyter Notebook
      •0•0•0•0•Updated Nov 13, 2025Nov 13, 2025

    • nf-core-configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •340•1•0•1•Updated Nov 12, 2025Nov 12, 2025

    • howtotalk-book

      Public
      How to talk to your bioinformatician - The Book
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • altamisa

      Public
      AltamISA: a Python API for ISA-Tab files
      bioinformaticsisaisa-tab
      Python
      •
      MIT License
      •2•6•23•7•Updated Nov 10, 2025Nov 10, 2025

    • howtotalk

      Public
      How to talk to your bioinformatician
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 6, 2025Nov 6, 2025