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    44 repositories

    • bio4j.github.com

      Public
      bio4j.com website
      HTML
      •0•0•0•3•Updated Oct 12, 2020Oct 12, 2020

    • data.genbank

      Public
      GenBank feature table ADT and parsers
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Jan 26, 2017Jan 26, 2017

    • release.generic

      Public
      Data import for standard open data
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•9•1•Updated Dec 19, 2016Dec 19, 2016

    • bio4j

      Public
      Bio4j abstract model and general entry point to the project
      javabioinformaticsdatabasegraphproteinsproteingene-ontologyjava-8graph-databasencbi-taxonomy
      Java
      •
      GNU Affero General Public License v3.0
      •19•121•5•1•Updated Dec 16, 2016Dec 16, 2016

    • data.uniprot

      Public
      UniProt entry ADT and parsers
      Scala
      •
      GNU Affero General Public License v3.0
      •0•1•6•0•Updated Nov 10, 2016Nov 10, 2016

    • data.go

      Public
      Gene Ontology data ADT and parsers
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Nov 9, 2016Nov 9, 2016

    • data.uniref

      Public
      UniRef data ADT and parsers
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Nov 9, 2016Nov 9, 2016

    • data.enzyme

      Public
      ENZYME data ADT and flat file parser
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Nov 5, 2016Nov 5, 2016

    • angulillos

      Public
      Java 8 library for strongly typed graph data
      javaschemagraphgraphsdata-modeltraversaljava8java-8graph-databasequery-dsl
      Java
      •
      GNU Affero General Public License v3.0
      •2•8•4•0•Updated Oct 29, 2016Oct 29, 2016

    • release.titan

      Public
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•2•1•Updated Oct 18, 2016Oct 18, 2016

    • angulillos-titan

      Public
      use Titan with a lot of angulillos
      javaschemagraphjava8java-8graph-databasequery-dsljava-librarytinkerpopquery-language
      Java
      •
      GNU Affero General Public License v3.0
      •1•4•3•0•Updated Oct 16, 2016Oct 16, 2016

    • xs4s

      Public
      XML Streaming for Scala
      Scala
      •
      Other
      •13•0•0•0•Updated Jun 7, 2016Jun 7, 2016

    • angulillos-neo4j

      Public
      use Neo4j with a lot of angulillos!
      Java
      •
      GNU Affero General Public License v3.0
      •0•0•2•0•Updated May 16, 2016May 16, 2016

    • bio4j-titan

      Public
      Titan-specific bio4j implementation
      Java
      •2•7•9•0•Updated Mar 14, 2016Mar 14, 2016

    • modules

      Public
      Statika-based bio4j module system
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•1•3•0•Updated Mar 11, 2016Mar 11, 2016

    • bio4j-examples

      Public
      Bio4j usage examples
      Java
      •
      GNU Affero General Public License v3.0
      •1•6•1•1•Updated Aug 31, 2015Aug 31, 2015

    • bio4j-json

      Public
      JSON serialization related classes for Bio4j entities used in Java programs
      Java
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 15, 2015Apr 15, 2015

    • bio4j-graphical-tools

      Public
      Java
      •
      GNU Affero General Public License v3.0
      •0•1•2•0•Updated Mar 5, 2015Mar 5, 2015

    • gsoc15

      Public
      project ideas for Google Summer of Code 2015
      0•3•2•0•Updated Feb 20, 2015Feb 20, 2015

    • angulillos-dynamodb

      Public
      Scala
      •
      GNU Affero General Public License v3.0
      •0•2•0•1•Updated Feb 1, 2015Feb 1, 2015

    • angulillos-gremlin

      Public
      Java
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Dec 9, 2014Dec 9, 2014

    • bio4j-neo4j

      Public
      Neo4j-specific implementation of Bio4j
      Java
      •
      GNU Affero General Public License v3.0
      •2•6•3•2•Updated Dec 4, 2014Dec 4, 2014

    • FOSDEM-2014

      Public
      slides from the two bio4j sessions in the graph processing devroom
      JavaScript
      •0•0•0•0•Updated Oct 8, 2014Oct 8, 2014

    • el-grafo

      Public
      GSoC 2014 project - D3-based Bio4j data model visualization
      JavaScript
      •3•4•8•2•Updated Oct 1, 2014Oct 1, 2014

    • exporter

      Public
      GSoC 2014 project
      Java
      •
      GNU Affero General Public License v3.0
      •3•3•0•0•Updated Aug 22, 2014Aug 22, 2014

    • dynamograph

      Public
      GSoC 2014 project - a DynamoDB based graph DB
      Scala
      •
      GNU Affero General Public License v3.0
      •1•4•8•3•Updated Aug 18, 2014Aug 18, 2014

    • dynamograph-ddwriter

      Public
      distributed writing code for dynamograph
      Scala
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Aug 17, 2014Aug 17, 2014

    • model-service

      Public
      An http service to discover Bio4j doman model
      Scala
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jun 28, 2014Jun 28, 2014

    • module-template.g8

      Public
      Giter8 template for a new Bio4j module
      Scala
      •0•0•0•0•Updated May 7, 2014May 7, 2014

    • blueprints

      Public
      Bio4j default Blueprints model implementation
      Java
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated May 7, 2014May 7, 2014