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    10 repositories

    • MatchY

      Public
      MatchY: Pedigree-based Y-STR match probability calculation
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2026Jan 27, 2026

    • MalePedigreeToolbox

      Public
      Tools for investigating male pedigrees
      Python
      •0•1•0•0•Updated Apr 10, 2025Apr 10, 2025

    • Yleaf

      Public
      Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
      pythonnext-generation-sequencingprediction-algorithmhaplogroupy-chromosome
      Python
      •
      GNU General Public License v3.0
      •13•32•9•3•Updated Mar 18, 2025Mar 18, 2025

    • str_nomenclature

      Public
      Convert a sequence to simple STR nomenclature
      Python
      •0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • de-goulash

      Public
      Genetic deconvolution of barcoded single cell RNA-seq
      C
      •0•9•1•0•Updated Jan 23, 2023Jan 23, 2023

    • nanopore-analysis-Pseudoclostridium

      Public
      R
      •0•0•0•0•Updated Aug 23, 2021Aug 23, 2021

    • Clean_tree2

      Public
      Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively…
      Python
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Dec 10, 2020Dec 10, 2020

    • Y-CpG

      Public
      Male-specific age estimation based on Y-chromosomal DNA methylation
      rstudiopredictionagedna-methylation450k
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

    • evCpGs

      Public
      CpGs whose methylation variation is equivalent between monozygotic co-twins and unrelated individuals
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2020Nov 13, 2020

    • TissueID

      Public
      A novel taxonomy-independent deep learning microbiome approach allow for accuaret classification of human epithelial materials
      deep-neural-networkspredictionartificial-intelligenceclassificationmicrobiome16s-rrna
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2019Jun 11, 2019