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    94 repositories

    • getzlab.github.io

      Public
      Getz Lab site
      HTML
      •66•4•0•3•Updated Feb 13, 2026Feb 13, 2026

    • HapASeg

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•6•Updated Feb 6, 2026Feb 6, 2026

    • canine

      Public
      A modular, high-performance computing solution to run jobs using SLURM
      bioinformaticsslurmhigh-performance-computing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•8•14•4•Updated Jan 27, 2026Jan 27, 2026

    • CLL_MRD_growth_kinetics

      Public
      Collection of notebooks in growth kinetics analysis for CLL MRD
      Jupyter Notebook
      •2•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • SignatureAnalyzer

      Public
      Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
      Python
      •
      MIT License
      •23•81•3•0•Updated Jan 20, 2026Jan 20, 2026

    • gbm_icb_manuscript

      Public
      Code for reproducing the figures in the Ghannam et al. GBM ICB manuscript
      Jupyter Notebook
      •0•2•0•0•Updated Nov 12, 2025Nov 12, 2025

    • ABSOLUTE

      Public
      ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •7•13•2•1•Updated Nov 5, 2025Nov 5, 2025

    • DLBCL-Classifier

      Public
      Jupyter Notebook
      •2•6•1•1•Updated Sep 25, 2025Sep 25, 2025

    • PhylogicNDT

      Public
      Fork for adding Python 3/hg38 support to PhylogicNDT
      HTML
      •
      Other
      •46•3•0•1•Updated Sep 18, 2025Sep 18, 2025

    • cnv_suite

      Public
      Compare, Visualize, and Simulate Copy Number Profiles
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•0•2•Updated Sep 10, 2025Sep 10, 2025

    • slurm_gcp_docker

      Public
      Spin up autoscaling Dockerized Slurm clusters on GCP
      Python
      •2•1•2•3•Updated Sep 7, 2025Sep 7, 2025

    • rapidautopsyportal

      Public
      Python
      •0•0•0•0•Updated Sep 3, 2025Sep 3, 2025

    • MutSig2CV_refactored

      Public
      MutSig2CV from Lawrence et al. 2014
      MATLAB
      •
      Other
      •10•0•0•0•Updated Aug 12, 2025Aug 12, 2025

    • BTK_Growth_Kinetics_analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • Chaudhary_Moorhead_Head-Neck_ClinCanRes_Manuscript_2025

      Public
      Figures for Chaudhary, Moorhead et al 2025
      Jupyter Notebook
      •1•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • Numbat-multiome_Analysis

      Public
      The repo containing the code/data/misc to reproduce figures contained in the manuscript of numbat-multiome
      R
      •0•1•0•0•Updated Jul 21, 2025Jul 21, 2025

    • neoag-tools

      Public
      Phasing and translation modules for neoantigen analysis
      Python
      •2•0•0•0•Updated Jul 16, 2025Jul 16, 2025

    • KeiraSummerCode

      Public
      Jupyter Notebook
      •0•0•0•1•Updated Jul 16, 2025Jul 16, 2025

    • igv_gdc_buddy

      Public
      stream & update gdc signed url to IGV
      Python
      •0•2•2•0•Updated Jun 26, 2025Jun 26, 2025

    • Rapid_Autopsy_Convergent_Evolution

      Public
      This repository contains code necessary to reproduce the results in the Rapid Autopsy Convergent Evolution paper
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • CloneSig

      Public
      Repository containing code for running CloneSig for identification of genes with convergent mutations
      Python
      •0•1•0•0•Updated Jun 10, 2025Jun 10, 2025

    • parsons_her2_tki_manuscript

      Public
      Code accompanying the Parsons HER2-amplified breast cancer/TKI manuscript
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 6, 2025Jun 6, 2025

    • MSMuTect_4

      Public
      A fork of MSMuTect4 to make it work with WolF.
      Python
      •
      MIT License
      •4•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • CLUMPS-PTM

      Public
      CLUMPS adapted to post-translational modifications.
      Python
      •
      MIT License
      •1•10•1•1•Updated May 22, 2025May 22, 2025

    • BTC_Cell_Line_Atlas_Manuscript

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated May 13, 2025May 13, 2025

    • DIGDriver

      Public
      Lab-internal version of DIG
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • SNVReviewer

      Public
      AnnoMate Reviewer for annotating and comparing single nucleotide variant(SNV)
      Python
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • SVelfie

      Public
      Python
      •
      Other
      •0•0•1•0•Updated Apr 3, 2025Apr 3, 2025

    • PurityReviewer

      Public
      Suite of purity reviewers and review components
      Python
      •0•2•0•0•Updated Apr 2, 2025Apr 2, 2025

    • SVelfie_old_production_repo_delete

      Public
      SVelfie (equivalent to v14 of the previously named SSVGAR module"
      Python
      •
      MIT License
      •0•1•0•0•Updated Mar 3, 2025Mar 3, 2025