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    73 repositories

    • combiExperiments

      Public
      Experiments that make use of the CombiAir and CombiLED toolboxes
      MATLAB
      •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • combiLEDToolbox

      Public
      Toolbox for the Prizmatix CombiLED light engine
      MATLAB
      •2•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • lightLoggerAnalysis

      Public
      Analysis of GKALab light logger recordings
      MATLAB
      •0•0•2•0•Updated Feb 13, 2026Feb 13, 2026

    • blnkAnalysis

      Public
      Python
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • combiAirToolbox

      Public
      Arduino code and API to control active air puff device created by Vincent Lau
      MATLAB
      •0•0•0•0•Updated Jan 9, 2026Jan 9, 2026

    • transparentTrack

      Public
      Determine pupil size and gaze location in IR video of the eye
      eye-trackingbiometricsray-tracingellipsepupilperspective-projection
      MATLAB
      •
      MIT License
      •10•22•2•0•Updated Dec 4, 2025Dec 4, 2025

    • gkaModelEye

      Public
      An anatomically accurate, ray-traced model eye in MATLAB.
      matlabraytraceropticsroutinespupilpupil-characteristicsquadricsmodel-eyeretinal-landmarks
      MATLAB
      •
      MIT License
      •11•41•0•0•Updated Nov 20, 2025Nov 20, 2025

    • preregistrations

      Public
      Preregistration documents for the GKAguirre Lab
      1•2•0•0•Updated Aug 18, 2025Aug 18, 2025

    • poemAnalysis

      Public
      Analysis code for the Penn Online Evaluation of Migraine (POEM)
      MATLAB
      •1•1•0•0•Updated Jul 24, 2025Jul 24, 2025

    • wasteSpatialFlicker

      Public
      Flicker for WASTE and vasomotion studies
      MATLAB
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • fwGearBuilder

      Public
      Code to assemble gears for use on the Flywheel platform
      C++
      •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • cgrpAnalysis

      Public
      Analysis of Kaiser light sensitivity data
      MATLAB
      •0•1•0•0•Updated Jul 17, 2024Jul 17, 2024

    • forwardModel

      Public
      MATLAB
      •2•2•0•0•Updated May 30, 2024May 30, 2024

    • Patterson_2024_JNeurosci

      Public
      Analysis code for 7T data with blocked post-receptoral direction and flicker frequency stimulation
      MATLAB
      •1•0•0•0•Updated May 6, 2024May 6, 2024

    • BLNK_2023_Expt

      Public
      Starting repo for the analysis of the trigeminal sensitivity blink data
      MATLAB
      •0•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • Kaiser_2024_Psychophysiology

      Public
      Analysis of blink response data using the BlinkCNS device
      MATLAB
      •1•1•0•0•Updated Feb 11, 2024Feb 11, 2024

    • forwardModelWrapper

      Public
      Wrapper and validation code to support compilation of the forwardModel function
      MATLAB
      •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

    • mriLDOGAnalysis

      Public
      Analysis code for all projects under the LDOG protocol
      MATLAB
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • flywheelMRSupport

      Public
      Routines to support the analysis of structural and functional MRI data in the Flywheel environment
      MATLAB
      •0•0•1•0•Updated Jan 29, 2024Jan 29, 2024

    • temporalFittingEngine

      Public
      A core computational engine, and associated models, for non-linear fitting of parametric models to time-series data
      MATLAB
      •0•0•2•0•Updated Jan 22, 2024Jan 22, 2024

    • rgcTemporalSensitivity

      Public
      A model of the temporal sensitivity of classes of retinal ganglion cells
      MATLAB
      •0•0•0•0•Updated Jan 13, 2024Jan 13, 2024

    • MRISurfaceMappingTools

      Public
      Python code and fw gear folders for MRI volume to surface mapping
      Python
      •0•0•0•0•Updated Jan 1, 2024Jan 1, 2024

    • pupilLDOGAnalysis

      Public
      Analysis of pupillometry data for the LDOG project
      MATLAB
      •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • fixelTOMEAnalysis

      Public
      Analysis code and Flywheel gear files for TOME fixel-based diffusion analysis
      MATLAB
      •0•2•0•0•Updated Jul 10, 2023Jul 10, 2023

    • mriTOMEAnalysis

      Public
      Analysis of structural and functional MRI data from the Cones-to-Cortex, Penn normal vision HCP project
      MATLAB
      •0•1•0•0•Updated Jun 27, 2023Jun 27, 2023

    • tomeMotionEnergy

      Public
      Motion energy analysis of the PIXAR clips used in the connectome project
      Python
      •0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • headingModel

      Public
      A model of neural response to heading orientation in the forwardModel framework
      MATLAB
      •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • mtrpGlarePupil

      Public
      MATLAB
      •0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • DeBruijn

      Public
      Software for the generation de Bruijn sequences for neuroscience experiments
      C++
      •
      BSD 4-Clause "Original" or "Old" License
      •5•3•0•0•Updated Jul 1, 2022Jul 1, 2022

    • mriAGTCAnalysis

      Public
      Analysis code for data fro the AGTC project
      MATLAB
      •0•0•0•0•Updated Jun 28, 2022Jun 28, 2022