Repositories list

• kehrlab.github.io

  Public
  Website of Algorithmic Bioinformatics group at the RCI

  HTML

  •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

• molemap

  Public
  C++

  •3•4•0•0•Updated Dec 3, 2025Dec 3, 2025

• PopinSnake

  Public
  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• PopDel

  Public

  kehrlab/PopDel’s past year of commit activity
  Population-wide Deletion Calling

  bioinformaticspopulation-genomicsvariant-calling+ 2structural-variationsv-calling

  C++

  •

  GNU General Public License v3.0

  •2•35•2•0•Updated Apr 16, 2025Apr 16, 2025

• MoleMapScripts

  Public
  Scripts used for testing and benchmarking of MoleMap

  Python

  •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• popins4snake

  Public
  C++

  •

  GNU General Public License v2.0

  •1•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• Complex-SV-Genotyping

  Public
  C++

  •

  GNU General Public License v3.0

  •0•10•1•0•Updated Oct 9, 2024Oct 9, 2024

• PopIns2

  Public

  kehrlab/PopIns2’s past year of commit activity
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs

  C++

  •

  GNU General Public License v2.0

  •3•26•3•0•Updated Apr 29, 2024Apr 29, 2024

• bcctools

  Public
  Correcting barcodes in 10X linked-read sequencing data.

  C++

  •

  GNU General Public License v3.0

  •3•4•1•0•Updated Apr 12, 2024Apr 12, 2024

• PopDel-scripts

  Public
  Collections of scripts used for the paper PopDel identifies medium-size deletions simultaneously in tens of thousands of genomes

  Shell

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Mar 22, 2022Mar 22, 2022

• bcsubset

  Public
  Tool for subsetting a BAM file based on a barcode whitelist

  C++

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Jul 15, 2021Jul 15, 2021